This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4dcy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:31, 14 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4dcy.png|left|200px]]
 
-
<!--
+
==X-ray structure of NikA in complex with Fe(1S,2S)-N,N-kappa-Bis(2-pyridylmethyl)-N-carboxymethyl-N-kappa-methyl-1,2-cyclohexanediamine==
-
The line below this paragraph, containing "STRUCTURE_4dcy", creates the "Structure Box" on the page.
+
<StructureSection load='4dcy' size='340' side='right'caption='[[4dcy]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[4dcy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DCY FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=L2M:{(R)-N-[(1S,2S)-2-{METHYL[(PYRIDIN-2-YL-KAPPAN)METHYL]AMINO-KAPPAN}CYCLOHEXYL]-N-[(PYRIDIN-2-YL-KAPPAN)METHYL]GLYCINATO-KAPPA~2~N,O}IRON(2+)'>L2M</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
{{STRUCTURE_4dcy| PDB=4dcy | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dcy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dcy OCA], [https://pdbe.org/4dcy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dcy RCSB], [https://www.ebi.ac.uk/pdbsum/4dcy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dcy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIKA_ECOLI NIKA_ECOLI] Involved in a nickel transport system, probably represents the nickel binder.
-
===X-ray structure of NikA in complex with Fe(1S,2S)-N,N-kappa-Bis(2-pyridylmethyl)-N-carboxymethyl-N-kappa-methyl-1,2-cyclohexanediamine===
+
==See Also==
-
 
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22526565}}, adds the Publication Abstract to the page
+
[[Category: Escherichia coli K-12]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 22526565 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Amara P]]
-
{{ABSTRACT_PUBMED_22526565}}
+
[[Category: Cavazza C]]
-
 
+
[[Category: Cherrier MV]]
-
==About this Structure==
+
[[Category: Fontecilla-Camps JC]]
-
[[4dcy]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DCY OCA].
+
[[Category: Girgenti E]]
-
 
+
[[Category: Iannello M]]
-
==Reference==
+
[[Category: Marchi-Delapierre C]]
-
<ref group="xtra">PMID:022526565</ref><references group="xtra"/>
+
[[Category: Menage S]]
-
[[Category: Escherichia coli]]
+
-
[[Category: Amara, P.]]
+
-
[[Category: Cavazza, C.]]
+
-
[[Category: Cherrier, M V.]]
+
-
[[Category: Fontecilla-Camps, J C.]]
+
-
[[Category: Girgenti, E.]]
+
-
[[Category: Iannello, M.]]
+
-
[[Category: Marchi-Delapierre, C.]]
+
-
[[Category: Menage, S.]]
+
-
[[Category: Metal transport]]
+
-
[[Category: Protein-bound iron complex]]
+
-
[[Category: Transport protein]]
+

Current revision

X-ray structure of NikA in complex with Fe(1S,2S)-N,N-kappa-Bis(2-pyridylmethyl)-N-carboxymethyl-N-kappa-methyl-1,2-cyclohexanediamine

PDB ID 4dcy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4dcy"
Personal tools