This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2fyf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2fyf" [edit=sysop:move=sysop])
Current revision (09:25, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fyf.png|left|200px]]
 
-
<!--
+
==Structure of a putative phosphoserine aminotransferase from Mycobacterium Tuberculosis==
-
The line below this paragraph, containing "STRUCTURE_2fyf", creates the "Structure Box" on the page.
+
<StructureSection load='2fyf' size='340' side='right'caption='[[2fyf]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2fyf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FYF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PC4:TETRACHLOROPLATINATE(II)'>PC4</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2fyf| PDB=2fyf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fyf OCA], [https://pdbe.org/2fyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fyf RCSB], [https://www.ebi.ac.uk/pdbsum/2fyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fyf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SERC_MYCTU SERC_MYCTU] Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine (By similarity).[HAMAP-Rule:MF_00160]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/2fyf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fyf ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of a putative phosphoserine aminotransferase from Mycobacterium Tuberculosis===
+
==See Also==
-
 
+
*[[Phosphoserine aminotransferase|Phosphoserine aminotransferase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_22525753}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 22525753 is the PubMed ID number.
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
-->
+
[[Category: Baker EN]]
-
{{ABSTRACT_PUBMED_22525753}}
+
[[Category: Coulibaly F]]
-
 
+
[[Category: Lassalle E]]
-
==About this Structure==
+
-
[[2fyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FYF OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:022525753</ref><references group="xtra"/>
+
-
[[Category: Mycobacterium tuberculosis]]
+
-
[[Category: Phosphoserine transaminase]]
+
-
[[Category: Baker, E N.]]
+
-
[[Category: Coulibaly, F.]]
+
-
[[Category: Lassalle, E.]]
+
-
[[Category: XMTB, Mycobacterium Tuberculosis Structural Proteomics Project.]]
+
-
[[Category: Dimer]]
+
-
[[Category: Mycobacterium tuberculosis structural proteomics project]]
+
-
[[Category: Plp-dependent enzyme]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+
-
[[Category: Xmtb]]
+

Current revision

Structure of a putative phosphoserine aminotransferase from Mycobacterium Tuberculosis

PDB ID 2fyf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools