2yka

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[[Image:2yka.jpg|left|200px]]
 
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==RRM domain of mRNA export adaptor REF2-I bound to HVS ORF57 peptide==
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The line below this paragraph, containing "STRUCTURE_2yka", creates the "Structure Box" on the page.
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<StructureSection load='2yka' size='340' side='right'caption='[[2yka]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2yka]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Saimiriine_gammaherpesvirus_2 Saimiriine gammaherpesvirus 2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YKA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YKA FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yka FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yka OCA], [https://pdbe.org/2yka PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yka RCSB], [https://www.ebi.ac.uk/pdbsum/2yka PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yka ProSAT]</span></td></tr>
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{{STRUCTURE_2yka| PDB=2yka | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ALRF2_MOUSE ALRF2_MOUSE] Export adapter involved in spliced and unspliced mRNA nuclear export. Binds mRNA which is transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway); enhances NXF1-NXT1 RNA-binding activity.<ref>PMID:10786854</ref> <ref>PMID:11158589</ref> <ref>PMID:18364396</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The essential herpesvirus adaptor protein HVS ORF57, which has homologs in all other herpesviruses, promotes viral mRNA export by utilizing the cellular mRNA export machinery. ORF57 protein specifically recognizes viral mRNA transcripts, and binds to proteins of the cellular transcription-export (TREX) complex, in particular ALYREF. This interaction introduces viral mRNA to the NXF1 pathway, subsequently directing it to the nuclear pore for export to the cytoplasm. Here we have used a range of techniques to reveal the sites for direct contact between RNA and ORF57 in the absence and presence of ALYREF. A binding site within ORF57 was characterized which recognizes specific viral mRNA motifs. When ALYREF is present, part of this ORF57 RNA binding site, composed of an alpha-helix, binds preferentially to ALYREF. This competitively displaces viral RNA from the alpha-helix, but contact with RNA is still maintained by a flanking region. At the same time, the flexible N-terminal domain of ALYREF comes into contact with the viral RNA, which becomes engaged in an extensive network of synergistic interactions with both ALYREF and ORF57. Transfer of RNA to ALYREF in the ternary complex, and involvement of individual ORF57 residues in RNA recognition, were confirmed by UV cross-linking and mutagenesis. The atomic-resolution structure of the ORF57-ALYREF interface was determined, which noticeably differed from the homologous ICP27-ALYREF structure. Together, the data provides the first site-specific description of how viral mRNA is locked by a herpes viral adaptor protein in complex with cellular ALYREF, giving herpesvirus access to the cellular mRNA export machinery. The NMR strategy used may be more generally applicable to the study of fuzzy protein-protein-RNA complexes which involve flexible polypeptide regions.
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===RRM domain of mRNA export adaptor REF2-I bound to HVS ORF57 peptide===
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Competitive and Cooperative Interactions Mediate RNA Transfer from Herpesvirus Saimiri ORF57 to the Mammalian Export Adaptor ALYREF.,Tunnicliffe RB, Hautbergue GM, Wilson SA, Kalra P, Golovanov AP PLoS Pathog. 2014 Feb 13;10(2):e1003907. doi: 10.1371/journal.ppat.1003907., eCollection 2014 Feb. PMID:24550725<ref>PMID:24550725</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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[[2yka]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [http://en.wikipedia.org/wiki/Saimiriine_herpesvirus_2 Saimiriine herpesvirus 2]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YKA OCA].
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<div class="pdbe-citations 2yka" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Saimiriine herpesvirus 2]]
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[[Category: Saimiriine gammaherpesvirus 2]]
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[[Category: Golovanov, A P.]]
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[[Category: Golovanov AP]]
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[[Category: Hautbergue, G M.]]
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[[Category: Hautbergue GM]]
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[[Category: Kalra, P.]]
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[[Category: Kalra P]]
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[[Category: Tunnicliffe, R B.]]
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[[Category: Tunnicliffe RB]]
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[[Category: Wilson, S A.]]
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[[Category: Wilson SA]]
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[[Category: Rna binding protein]]
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[[Category: Rna binding protein-transcription complex]]
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Current revision

RRM domain of mRNA export adaptor REF2-I bound to HVS ORF57 peptide

PDB ID 2yka

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