1fep

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 6 November 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fep.png|left|200px]]
 
-
<!--
+
==FERRIC ENTEROBACTIN RECEPTOR==
-
The line below this paragraph, containing "STRUCTURE_1fep", creates the "Structure Box" on the page.
+
<StructureSection load='1fep' size='340' side='right'caption='[[1fep]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1fep]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FEP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1fep| PDB=1fep | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fep OCA], [https://pdbe.org/1fep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fep RCSB], [https://www.ebi.ac.uk/pdbsum/1fep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fep ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FEPA_ECOLI FEPA_ECOLI] This protein is involved in the initial step of iron uptake by binding ferrienterobactin (Fe-ENT), an iron chelatin siderophore that allows E.coli to extract iron from the environment. FepA also acts as a receptor for colicins B and D.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fe/1fep_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fep ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Integral outer membrane receptors for iron chelates and vitamin B12 carry out specific ligand transport against a concentration gradient. Energy for active transport is obtained from the proton-motive force of the inner membrane through physical interaction with TonB-ExbB-ExbD, an inner membrane complex. Here we report the crystal structure of an active transport, outer membrane receptor at 2.4 A resolution. Two distinct functional domains are revealed: (i) a 22-stranded beta-barrel that spans the outer membrane and contains large extracellular loops which appear to function in ligand binding; and (ii) a globular N-terminal domain that folds into the barrel pore, inhibiting access to the periplasm and contributing two additional loops for potential ligand binding. These loops could provide a signaling pathway between the processes of ligand recognition and TonB-mediated transport. The blockage of the pore suggests that the N-terminal domain must undergo a conformational rearrangement to allow ligand transport into the periplasm.
-
===FERRIC ENTEROBACTIN RECEPTOR===
+
Crystal structure of the outer membrane active transporter FepA from Escherichia coli.,Buchanan SK, Smith BS, Venkatramani L, Xia D, Esser L, Palnitkar M, Chakraborty R, van der Helm D, Deisenhofer J Nat Struct Biol. 1999 Jan;6(1):56-63. PMID:9886293<ref>PMID:9886293</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9886293}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1fep" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9886293 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_9886293}}
+
-
 
+
-
==About this Structure==
+
-
[[1fep]] is a 1 chain structure of [[Ferric enterobactin receptor]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FEP OCA].
+
==See Also==
==See Also==
*[[Ferric enterobactin receptor|Ferric enterobactin receptor]]
*[[Ferric enterobactin receptor|Ferric enterobactin receptor]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:009886293</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Escherichia coli k12]]
+
</StructureSection>
-
[[Category: Buchanan, S K.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Chakraborty, R.]]
+
[[Category: Large Structures]]
-
[[Category: Deisenhofer, J.]]
+
[[Category: Buchanan SK]]
-
[[Category: Esser, L.]]
+
[[Category: Chakraborty R]]
-
[[Category: Helm, D Van Der.]]
+
[[Category: Deisenhofer J]]
-
[[Category: Palnitkar, M.]]
+
[[Category: Esser L]]
-
[[Category: Smith, B S.]]
+
[[Category: Palnitkar M]]
-
[[Category: Ventatramani, L.]]
+
[[Category: Smith BS]]
-
[[Category: Xia, D.]]
+
[[Category: Van Der Helm D]]
-
[[Category: Iron transport]]
+
[[Category: Ventatramani L]]
-
[[Category: Membrane protein]]
+
[[Category: Xia D]]
-
[[Category: Outer membrane]]
+
-
[[Category: Receptor]]
+
-
[[Category: Tonb]]
+
-
[[Category: Transport]]
+

Current revision

FERRIC ENTEROBACTIN RECEPTOR

PDB ID 1fep

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools