This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Template:STRUCTURE 3fpl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:51, 29 January 2014) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 3: Line 3:
|LIGAND= <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|LIGAND= <scene name='pdbligand=CAC:CACODYLATE+ION'>CAC</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alcohol_dehydrogenase_(NADP(+)) Alcohol dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.2 1.1.1.2] </span>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Alcohol_dehydrogenase_(NADP(+)) Alcohol dehydrogenase (NADP(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.2 1.1.1.2] </span>
-
|GENE= ADH1, ADH1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Clostridium beijerinckii, Thermoanaerobacter brockii])
+
|GENE= ADH1, ADH1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1520 "Clostridium rubrum" Ng and Vaughn 1963])
|RELATEDENTRY=[[3fpc|3fpc]]
|RELATEDENTRY=[[3fpc|3fpc]]
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpl OCA], [http://www.ebi.ac.uk/pdbsum/3fpl PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3fpl RCSB]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fpl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fpl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fpl RCSB], [http://www.ebi.ac.uk/pdbsum/3fpl PDBsum]</span>
-
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002085 Ipr002085], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002328 Ipr002328], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011032 Ipr011032], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013149 Ipr013149], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013154 Ipr013154], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR016040 Ipr016040]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00107 PF00107], [http://pfam.sanger.ac.uk/family?acc=PF08240 PF08240]</span>
+
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/3fplA01 3Fpla01], [http://www.cathdb.info/domain/3fplA02 3Fpla02]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002085 Ipr002085], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002328 Ipr002328], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011032 Ipr011032], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013149 Ipr013149], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013154 Ipr013154]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00107 PF00107], [http://pfam.sanger.ac.uk/family?acc=PF08240 PF08240]</span>
|uPDB=3FPL|CONSURF={{!}}-
|uPDB=3FPL|CONSURF={{!}}-
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
-
{{!}} '''Toggle Conservation Colors:'''
 
-
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 
-
Rows = identical sequences:
 
-
<jmol>
 
-
<jmolButton>
 
-
<script></script>
 
-
<text>A [x]</text>
 
-
<name>jmb_3fpl_A</name>
 
-
<title>toggle chain A</title>
 
-
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 
-
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 
-
</jmolButton>
 
-
</jmol>
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
3fpl, resolution 1.90Å ()
Ligands: , , , ,
Gene: ADH1, ADH1 ("Clostridium rubrum" Ng and Vaughn 1963)
Activity: Alcohol dehydrogenase (NADP(+)), with EC number 1.1.1.2
Related: 3fpc
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools