This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2xdc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2xdc.png|left|200px]]
 
-
{{STRUCTURE_2xdc| PDB=2xdc | SCENE= }}
+
==Structure of linear gramicidin D obtained using Type I crystals grown in a lipid cubic phase.==
-
 
+
<StructureSection load='2xdc' size='340' side='right'caption='[[2xdc]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Structure of linear gramicidin D obtained using Type I crystals grown in a lipid cubic phase.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2xdc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XDC FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_20682243}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=15P:POLYETHYLENE+GLYCOL+(N=34)'>15P</scene>, <scene name='pdbligand=DLE:D-LEUCINE'>DLE</scene>, <scene name='pdbligand=DVA:D-VALINE'>DVA</scene>, <scene name='pdbligand=ETA:ETHANOLAMINE'>ETA</scene>, <scene name='pdbligand=FVA:N-FORMYL-L-VALINE'>FVA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PRD_000150:GRAMICIDIN+A'>PRD_000150</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xdc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xdc OCA], [https://pdbe.org/2xdc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xdc RCSB], [https://www.ebi.ac.uk/pdbsum/2xdc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xdc ProSAT]</span></td></tr>
-
[[2xdc]] is a 6 chain structure of [[Gramicidin]] with sequence from [http://en.wikipedia.org/wiki/Brevibacillus_brevis Brevibacillus brevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XDC OCA].
+
</table>
==See Also==
==See Also==
*[[Gramicidin|Gramicidin]]
*[[Gramicidin|Gramicidin]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:020682243</ref><references group="xtra"/>
+
[[Category: Brevibacillus brevis]]
[[Category: Brevibacillus brevis]]
-
[[Category: Aragao, D.]]
+
[[Category: Large Structures]]
-
[[Category: Caffrey, M.]]
+
[[Category: Aragao D]]
-
[[Category: Hoefer, N.]]
+
[[Category: Caffrey M]]
-
[[Category: Antibacterial]]
+
[[Category: Hoefer N]]
-
[[Category: Antibiotic]]
+
-
[[Category: Antifungal]]
+
-
[[Category: Bilayer]]
+
-
[[Category: Ion channel]]
+
-
[[Category: Lipid cubic phase]]
+
-
[[Category: Mesophase sponge phase]]
+
-
[[Category: Monoolein]]
+

Current revision

Structure of linear gramicidin D obtained using Type I crystals grown in a lipid cubic phase.

PDB ID 2xdc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2xdc"
Personal tools