2p69

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:55, 30 August 2023) (edit) (undo)
 
(21 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p69.jpg|left|200px]]<br /><applet load="2p69" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2p69, resolution 2.250&Aring;" />
 
-
'''Crystal Structure of Human Pyridoxal Phosphate Phosphatase with PLP'''<br />
 
-
==Disease==
+
==Crystal Structure of Human Pyridoxal Phosphate Phosphatase with PLP==
-
Known diseases associated with this structure: Pelizaeus-Merzbacher disease OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=300401 300401]], Spastic paraplegia-2 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=300401 300401]]
+
<StructureSection load='2p69' size='340' side='right'caption='[[2p69]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2p69]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P69 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P69 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p69 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p69 OCA], [https://pdbe.org/2p69 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p69 RCSB], [https://www.ebi.ac.uk/pdbsum/2p69 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p69 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2p69 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PLPP_HUMAN PLPP_HUMAN] Protein serine phosphatase that dephosphorylates 'Ser-3' in cofilin and probably also dephosphorylates phospho-serine residues in DSTN. Regulates cofilin-dependent actin cytoskeleton reorganization. Required for normal progress through mitosis and normal cytokinesis. Does not dephosphorylate phospho-threonines in LIMK1. Does not dephosphorylate peptides containing phospho-tyrosine. Pyridoxal phosphate phosphatase. Has some activity towards pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PMP) and pyridoxine 5'-phosphate (PNP), with a highest activity with PLP followed by PNP.<ref>PMID:14522954</ref> <ref>PMID:15580268</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p69_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p69 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The New York SGX Research Center for Structural Genomics (NYSGXRC) of the NIGMS Protein Structure Initiative (PSI) has applied its high-throughput X-ray crystallographic structure determination platform to systematic studies of all human protein phosphatases and protein phosphatases from biomedically-relevant pathogens. To date, the NYSGXRC has determined structures of 21 distinct protein phosphatases: 14 from human, 2 from mouse, 2 from the pathogen Toxoplasma gondii, 1 from Trypanosoma brucei, the parasite responsible for African sleeping sickness, and 2 from the principal mosquito vector of malaria in Africa, Anopheles gambiae. These structures provide insights into both normal and pathophysiologic processes, including transcriptional regulation, regulation of major signaling pathways, neural development, and type 1 diabetes. In conjunction with the contributions of other international structural genomics consortia, these efforts promise to provide an unprecedented database and materials repository for structure-guided experimental and computational discovery of inhibitors for all classes of protein phosphatases.
-
==About this Structure==
+
Structural genomics of protein phosphatases.,Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK J Struct Funct Genomics. 2007 Sep;8(2-3):121-40. Epub 2007 Dec 5. PMID:18058037<ref>PMID:18058037</ref>
-
2P69 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=PLP:'>PLP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Pyridoxal_phosphatase Pyridoxal phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.74 3.1.3.74] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P69 OCA].
+
-
[[Category: Homo sapiens]]
+
-
[[Category: Pyridoxal phosphatase]]
+
-
[[Category: Single protein]]
+
-
[[Category: Almo, S.C.]]
+
-
[[Category: Burley, S.K.]]
+
-
[[Category: Freeman, J.]]
+
-
[[Category: Izuka, M.]]
+
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
-
[[Category: Ramagopal, U.A.]]
+
-
[[Category: Sauder, J.M.]]
+
-
[[Category: Toro, R.]]
+
-
[[Category: CA]]
+
-
[[Category: PLP]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: phosphatase]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomics]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Feb 15 17:41:15 2008''
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2p69" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Homo sapiens]]
 +
[[Category: Large Structures]]
 +
[[Category: Almo SC]]
 +
[[Category: Burley SK]]
 +
[[Category: Freeman J]]
 +
[[Category: Izuka M]]
 +
[[Category: Ramagopal UA]]
 +
[[Category: Sauder JM]]
 +
[[Category: Toro R]]

Current revision

Crystal Structure of Human Pyridoxal Phosphate Phosphatase with PLP

PDB ID 2p69

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2p69"
Personal tools