4aqy

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[[Image:4aqy.jpg|left|200px]]
 
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{{STRUCTURE_4aqy| PDB=4aqy | SCENE= }}
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==Structure of ribosome-apramycin complexes==
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<StructureSection load='4aqy' size='340' side='right'caption='[[4aqy]], [[Resolution|resolution]] 3.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4aqy]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AQY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AM2:APRAMYCIN'>AM2</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4aqy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4aqy OCA], [https://pdbe.org/4aqy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4aqy RCSB], [https://www.ebi.ac.uk/pdbsum/4aqy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4aqy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Aminoglycosides are potent antibacterials, but therapy is compromised by substantial toxicity causing, in particular, irreversible hearing loss. Aminoglycoside ototoxicity occurs both in a sporadic dose-dependent and in a genetically predisposed fashion. We recently have developed a mechanistic concept that postulates a key role for the mitochondrial ribosome (mitoribosome) in aminoglycoside ototoxicity. We now report on the surprising finding that apramycin, a structurally unique aminoglycoside licensed for veterinary use, shows little activity toward eukaryotic ribosomes, including hybrid ribosomes which were genetically engineered to carry the mitoribosomal aminoglycoside-susceptibility A1555G allele. In ex vivo cultures of cochlear explants and in the in vivo guinea pig model of chronic ototoxicity, apramycin causes only little hair cell damage and hearing loss but it is a potent antibacterial with good activity against a range of clinical pathogens, including multidrug-resistant Mycobacterium tuberculosis. These data provide proof of concept that antibacterial activity can be dissected from aminoglycoside ototoxicity. Together with 3D structures of apramycin-ribosome complexes at 3.5-A resolution, our results provide a conceptual framework for further development of less toxic aminoglycosides by hypothesis-driven chemical synthesis.
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===Structure of ribsome-apramycin complexes===
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Dissociation of antibacterial activity and aminoglycoside ototoxicity in the 4-monosubstituted 2-deoxystreptamine apramycin.,Matt T, Ng CL, Lang K, Sha SH, Akbergenov R, Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR, Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J, Bottger EC Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10984-9. Epub 2012 Jun 14. PMID:22699498<ref>PMID:22699498</ref>
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{{ABSTRACT_PUBMED_22699498}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4aqy" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[4aqy]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AQY OCA].
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*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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==Reference==
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== References ==
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<ref group="xtra">PMID:022699498</ref><references group="xtra"/>
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
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[[Category: Akbergenov, R.]]
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[[Category: Akbergenov R]]
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[[Category: Bottger, E C.]]
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[[Category: Bottger EC]]
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[[Category: Dubbaka, S R.]]
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[[Category: Dubbaka SR]]
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[[Category: Duscha, S.]]
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[[Category: Duscha S]]
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[[Category: Lang, K.]]
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[[Category: Lang K]]
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[[Category: Matt, T.]]
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[[Category: Matt T]]
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[[Category: Meyer, M.]]
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[[Category: Meyer M]]
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[[Category: Ng, C L.]]
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[[Category: Ng CL]]
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[[Category: Perez-Fernandez, D.]]
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[[Category: Perez-Fernandez D]]
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[[Category: Ramakrishnan, V.]]
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[[Category: Ramakrishnan V]]
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[[Category: Schacht, J.]]
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[[Category: Schacht J]]
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[[Category: Sha, S H.]]
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[[Category: Sha SH]]
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[[Category: Shcherbakov, D.]]
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[[Category: Shcherbakov D]]
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[[Category: Vasella, A.]]
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[[Category: Vasella A]]
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[[Category: Xie, J.]]
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[[Category: Xie J]]
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[[Category: Apramycin]]
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[[Category: Ribosome]]
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[[Category: Toxicity]]
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Current revision

Structure of ribosome-apramycin complexes

PDB ID 4aqy

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