1odj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:46, 17 April 2024) (edit) (undo)
 
(20 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1odj.gif|left|200px]]<br />
 
-
<applet load="1odj" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1odj, resolution 2.40&Aring;" />
 
-
'''PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS'''<br />
 
-
==About this Structure==
+
==PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS==
-
1ODJ is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]] with SO4 and GMP as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/S-methyl-5-thioadenosine_phosphorylase S-methyl-5-thioadenosine phosphorylase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.28 2.4.2.28]]. Structure known Active Site: AC1. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ODJ OCA]].
+
<StructureSection load='1odj' size='340' side='right'caption='[[1odj]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
[[Category: S-methyl-5-thioadenosine phosphorylase]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1odj]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ODJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ODJ FirstGlance]. <br>
-
[[Category: Thermus thermophilus]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
[[Category: Inagaki, E.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GMP:GUANOSINE'>GMP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[Category: Miyano, M.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1odj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1odj OCA], [https://pdbe.org/1odj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1odj RCSB], [https://www.ebi.ac.uk/pdbsum/1odj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1odj ProSAT], [https://www.topsan.org/Proteins/RSGI/1odj TOPSAN]</span></td></tr>
-
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+
</table>
-
[[Category: Tahirov, T.H.]]
+
== Function ==
-
[[Category: GMP]]
+
[https://www.uniprot.org/uniprot/Q5SID9_THET8 Q5SID9_THET8]
-
[[Category: SO4]]
+
== Evolutionary Conservation ==
-
[[Category: alpha-beta protein]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: guanosine]]
+
Check<jmol>
-
[[Category: nucleoside phosphorylase]]
+
<jmolCheckbox>
-
[[Category: riken structural genomics/proteomics initiative]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/1odj_consurf.spt"</scriptWhenChecked>
-
[[Category: rsgi]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: structural genomics]]
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1odj ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 13:35:25 2007''
+
==See Also==
 +
*[[Purine nucleoside phosphorylase 3D structures|Purine nucleoside phosphorylase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermus thermophilus HB8]]
 +
[[Category: Inagaki E]]
 +
[[Category: Miyano M]]
 +
[[Category: Tahirov TH]]

Current revision

PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS

PDB ID 1odj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1odj"
Personal tools