This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kgb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:14, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3kgb.png|left|200px]]
 
-
{{STRUCTURE_3kgb| PDB=3kgb | SCENE= }}
+
==Crystal structure of thymidylate synthase 1/2 from Encephalitozoon cuniculi at 2.2 A resolution==
-
 
+
<StructureSection load='3kgb' size='340' side='right'caption='[[3kgb]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===Crystal structure of thymidylate synthase 1/2 from Encephalitozoon cuniculi at 2.2 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3kgb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Encephalitozoon_cuniculi_GB-M1 Encephalitozoon cuniculi GB-M1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KGB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KGB FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
[[3kgb]] is a 1 chain structure of [[Thymidylate synthase]] with sequence from [http://en.wikipedia.org/wiki/Encephalitozoon_cuniculi Encephalitozoon cuniculi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KGB OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kgb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kgb OCA], [https://pdbe.org/3kgb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kgb RCSB], [https://www.ebi.ac.uk/pdbsum/3kgb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kgb ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TYS1_ENCCU TYS1_ENCCU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/3kgb_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3kgb ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Thymidylate synthase|Thymidylate synthase]]
+
*[[Thymidylate synthase 3D structures|Thymidylate synthase 3D structures]]
-
[[Category: Encephalitozoon cuniculi]]
+
__TOC__
-
[[Category: Thymidylate synthase]]
+
</StructureSection>
-
[[Category: Ssgcid, Seattle Structural Genomics Center for Infectious Disease.]]
+
[[Category: Encephalitozoon cuniculi GB-M1]]
-
[[Category: Decode]]
+
[[Category: Large Structures]]
-
[[Category: Encephalitozoon cuniculi]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: Niaid]]
+
-
[[Category: Nih]]
+
-
[[Category: Nucleotide biosynthesis]]
+
-
[[Category: Sbri]]
+
-
[[Category: Seattle structural genomics center for infectious disease]]
+
-
[[Category: Ssgcid]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Thymidylate synthase]]
+
-
[[Category: Transferase]]
+
-
[[Category: Uw]]
+

Current revision

Crystal structure of thymidylate synthase 1/2 from Encephalitozoon cuniculi at 2.2 A resolution

PDB ID 3kgb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools