1q0d
From Proteopedia
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| - | [[Image:1q0d.png|left|200px]] | ||
| - | + | ==Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the oxidized state== | |
| - | + | <StructureSection load='1q0d' size='340' side='right'caption='[[1q0d]], [[Resolution|resolution]] 2.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1q0d]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_seoulensis Streptomyces seoulensis]. The October 2007 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Superoxide Dismutase'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2007_10 10.2210/rcsb_pdb/mom_2007_10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q0D FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3NI:NICKEL+(III)+ION'>3NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q0d OCA], [https://pdbe.org/1q0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q0d RCSB], [https://www.ebi.ac.uk/pdbsum/1q0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q0d ProSAT]</span></td></tr> |
| - | [[1q0d]] is a 12 chain structure | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SODN_STRSO SODN_STRSO] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q0/1q0d_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q0d ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Superoxide | + | *[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | < | + | [[Category: Large Structures]] |
[[Category: RCSB PDB Molecule of the Month]] | [[Category: RCSB PDB Molecule of the Month]] | ||
[[Category: Streptomyces seoulensis]] | [[Category: Streptomyces seoulensis]] | ||
[[Category: Superoxide Dismutase]] | [[Category: Superoxide Dismutase]] | ||
| - | [[Category: | + | [[Category: Djinovic Carugo K]] |
| - | + | [[Category: Kang S-O]] | |
| - | [[Category: Kang | + | [[Category: Lee J-W]] |
| - | [[Category: Lee | + | [[Category: Wuerges J]] |
| - | [[Category: Wuerges | + | [[Category: Yim H-S]] |
| - | [[Category: Yim | + | [[Category: Yim Y-I]] |
| - | [[Category: Yim | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the oxidized state
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