This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1cpr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:41, 13 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1cpr.png|left|200px]]
 
-
{{STRUCTURE_1cpr| PDB=1cpr | SCENE= }}
+
==ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS==
-
 
+
<StructureSection load='1cpr' size='340' side='right'caption='[[1cpr]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
===ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1cpr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CPR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CPR FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15299853}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cpr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cpr OCA], [https://pdbe.org/1cpr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cpr RCSB], [https://www.ebi.ac.uk/pdbsum/1cpr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cpr ProSAT]</span></td></tr>
-
[[1cpr]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CPR OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYCP_RHOCA CYCP_RHOCA] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cp/1cpr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cpr ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:015299853</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Rhodobacter capsulatus]]
[[Category: Rhodobacter capsulatus]]
-
[[Category: Cusanovich, M A.]]
+
[[Category: Cusanovich MA]]
-
[[Category: Meyer, T E.]]
+
[[Category: Meyer TE]]
-
[[Category: Misaki, S.]]
+
[[Category: Misaki S]]
-
[[Category: Tahirov, T H.]]
+
[[Category: Tahirov TH]]
-
[[Category: Yasuoka, N.]]
+
[[Category: Yasuoka N]]
-
[[Category: Cytochrome]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Heme protein]]
+

Current revision

ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS

PDB ID 1cpr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools