This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2p76
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2p76.png|left|200px]] | ||
| - | + | ==Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus== | |
| - | + | <StructureSection load='2p76' size='340' side='right'caption='[[2p76]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2p76]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P76 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> | |
| - | == | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | [[2p76]] is a 8 chain structure | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p76 OCA], [https://pdbe.org/2p76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p76 RCSB], [https://www.ebi.ac.uk/pdbsum/2p76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p76 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2p76 TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A0H3JTK7_STAAN A0A0H3JTK7_STAAN] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p7/2p76_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p76 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Phosphodiesterase|Phosphodiesterase]] | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Staphylococcus aureus subsp. aureus]] | + | </StructureSection> |
| - | [[Category: Almo | + | [[Category: Large Structures]] |
| - | [[Category: Burley | + | [[Category: Staphylococcus aureus subsp. aureus N315]] |
| - | [[Category: Fedorov | + | [[Category: Almo SC]] |
| - | [[Category: Fedorov | + | [[Category: Burley SK]] |
| - | + | [[Category: Fedorov AA]] | |
| - | [[Category: Sauder | + | [[Category: Fedorov EV]] |
| - | + | [[Category: Sauder JM]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus
| |||||||||||
