This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ch0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ch0" [edit=sysop:move=sysop])
Current revision (11:30, 1 February 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ch0.png|left|200px]]
 
-
{{STRUCTURE_3ch0| PDB=3ch0 | SCENE= }}
+
==Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution==
-
 
+
<StructureSection load='3ch0' size='340' side='right'caption='[[3ch0]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
===Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ch0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CH0 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ch0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ch0 OCA], [https://pdbe.org/3ch0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ch0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ch0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ch0 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ch0 TOPSAN]</span></td></tr>
-
[[3ch0]] is a 1 chain structure of [[Phosphodiesterase]] with sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_atcc_33406 Cytophaga hutchinsonii atcc 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CH0 OCA].
+
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/3ch0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ch0 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phosphodiesterase|Phosphodiesterase]]
+
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
-
[[Category: Cytophaga hutchinsonii atcc 33406]]
+
__TOC__
-
[[Category: Glycerophosphodiester phosphodiesterase]]
+
</StructureSection>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
[[Category: Cytophaga hutchinsonii ATCC 33406]]
-
[[Category: Glycerophosphoryl diester phosphodiesterase]]
+
[[Category: Large Structures]]
-
[[Category: Hydrolase]]
+
-
[[Category: Jcsg]]
+
-
[[Category: Joint center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Yp_677622 1]]
+

Current revision

Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution

PDB ID 3ch0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools