This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xnr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:19, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xnr.png|left|200px]]
 
-
{{STRUCTURE_1xnr| PDB=1xnr | SCENE= }}
+
==Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center==
-
 
+
<StructureSection load='1xnr' size='340' side='right'caption='[[1xnr]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-
===Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1xnr]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XNR FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15558050}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAR:PAROMOMYCIN'>PAR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xnr OCA], [https://pdbe.org/1xnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xnr RCSB], [https://www.ebi.ac.uk/pdbsum/1xnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xnr ProSAT]</span></td></tr>
-
[[1xnr]] is a 23 chain structure of [[Ribosomal protein S10]], [[Ribosomal protein S11]], [[Ribosomal protein S12]], [[Ribosomal protein S13]], [[Ribosomal protein S14]], [[Ribosomal protein S15]], [[Ribosomal protein S16]], [[Ribosomal protein S17]], [[Ribosomal protein S18]], [[Ribosomal protein S19]], [[Ribosomal protein S2]], [[Ribosomal protein S20]], [[Ribosomal protein S3]], [[Ribosomal protein S4]], [[Ribosomal protein S5]], [[Ribosomal protein S6]], [[Ribosomal protein S7]], [[Ribosomal protein S8]], [[Ribosomal protein S9]] and [[Ribosomal protein THX]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XNR OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RS2_THET8 RS2_THET8] Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit.[HAMAP-Rule:MF_00291_B]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xn/1xnr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xnr ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ribosomal protein S10|Ribosomal protein S10]]
+
*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
-
*[[Ribosomal protein S11|Ribosomal protein S11]]
+
*[[Ribosome 3D structures|Ribosome 3D structures]]
-
*[[Ribosomal protein S12|Ribosomal protein S12]]
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
-
*[[Ribosomal protein S13|Ribosomal protein S13]]
+
__TOC__
-
*[[Ribosomal protein S14|Ribosomal protein S14]]
+
</StructureSection>
-
*[[Ribosomal protein S15|Ribosomal protein S15]]
+
[[Category: Large Structures]]
-
*[[Ribosomal protein S16|Ribosomal protein S16]]
+
-
*[[Ribosomal protein S17|Ribosomal protein S17]]
+
-
*[[Ribosomal protein S18|Ribosomal protein S18]]
+
-
*[[Ribosomal protein S19|Ribosomal protein S19]]
+
-
*[[Ribosomal protein S2|Ribosomal protein S2]]
+
-
*[[Ribosomal protein S20|Ribosomal protein S20]]
+
-
*[[Ribosomal protein S3|Ribosomal protein S3]]
+
-
*[[Ribosomal protein S4|Ribosomal protein S4]]
+
-
*[[Ribosomal protein S5|Ribosomal protein S5]]
+
-
*[[Ribosomal protein S6|Ribosomal protein S6]]
+
-
*[[Ribosomal protein S7|Ribosomal protein S7]]
+
-
*[[Ribosomal protein S8|Ribosomal protein S8]]
+
-
*[[Ribosomal protein S9|Ribosomal protein S9]]
+
-
*[[Ribosomal protein THX|Ribosomal protein THX]]
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:015558050</ref><references group="xtra"/>
+
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
-
[[Category: Murphy, F V.]]
+
[[Category: Murphy FV]]
-
[[Category: Ramakrishnan, V.]]
+
[[Category: Ramakrishnan V]]
-
[[Category: 30]]
+
-
[[Category: Decoding]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Translation]]
+
-
[[Category: Trna modification]]
+

Current revision

Crystal Structure of an Inosine-Cytosine Wobble Base Pair in the Context of the Decoding Center

PDB ID 1xnr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xnr"
Personal tools