This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1r2x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1r2x" [edit=sysop:move=sysop])
Current revision (08:20, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1r2x.png|left|200px]]
 
-
{{STRUCTURE_1r2x| PDB=1r2x | SCENE= }}
+
==Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome==
-
 
+
<SX load='1r2x' size='340' side='right' viewer='molstar' caption='[[1r2x]], [[Resolution|resolution]] 9.00&Aring;' scene=''>
-
===Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1r2x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R2X FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_14566331}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r2x OCA], [https://pdbe.org/1r2x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r2x RCSB], [https://www.ebi.ac.uk/pdbsum/1r2x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r2x ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1r2x]] is a 2 chain structure of [[Ribosomal protein L11]] with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R2X OCA].
+
== Function ==
 +
[https://www.uniprot.org/uniprot/RL11_THEMA RL11_THEMA] This protein binds directly to 23S ribosomal RNA.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r2/1r2x_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r2x ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ribosomal protein L11|Ribosomal protein L11]]
+
*[[Ribosomal protein L11 3D structures|Ribosomal protein L11 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</SX>
-
<ref group="xtra">PMID:014566331</ref><references group="xtra"/>
+
[[Category: Escherichia coli]]
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: Ehrenberg, M.]]
+
[[Category: Ehrenberg M]]
-
[[Category: Frank, J.]]
+
[[Category: Frank J]]
-
[[Category: Harvey, S C.]]
+
[[Category: Harvey SC]]
-
[[Category: Li, W.]]
+
[[Category: Li W]]
-
[[Category: Nielsen, R C.]]
+
[[Category: Nielsen RC]]
-
[[Category: Nissen, P.]]
+
[[Category: Nissen P]]
-
[[Category: Sengupta, J.]]
+
[[Category: Sengupta J]]
-
[[Category: Stagg, S M.]]
+
[[Category: Stagg SM]]
-
[[Category: Valle, M.]]
+
[[Category: Valle M]]
-
[[Category: Zavialov, A.]]
+
[[Category: Zavialov A]]
-
[[Category: Ribosomal protein]]
+
-
[[Category: Rna]]
+
-
[[Category: Rna binding protein-rna complex]]
+

Current revision

Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome

1r2x, resolution 9.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1r2x"
Personal tools