2dge

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[[Image:2dge.png|left|200px]]
 
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{{STRUCTURE_2dge| PDB=2dge | SCENE= }}
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==Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana==
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<StructureSection load='2dge' size='340' side='right'caption='[[2dge]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2dge]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DGE FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dge OCA], [https://pdbe.org/2dge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dge RCSB], [https://www.ebi.ac.uk/pdbsum/2dge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dge ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYC6_ARATH CYC6_ARATH] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dg/2dge_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dge ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Compared with algal and cyanobacterial cytochrome c(6), cytochrome c(6A) from higher plants contains an additional loop of 12 amino acid residues. We have determined the first crystal structure of cytochrome c(6A) from Arabidopsis thaliana at 1.5 Angstrom resolution in order to help elucidate its function. The overall structure of cytochrome c(6A) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys16 and Cys19, and the iron has octahedral coordination with His20 and Met60 as the axial ligands. Two cysteine residues (Cys67 and Cys73) within the characteristic 12 amino acids loop form a disulfide bond, contributing to the structural stability of cytochrome c(6A). Our model provides a chemical basis for the known low redox potential of cytochrome c(6A) which makes it an unsuitable electron carrier between cytochrome b(6)f and PSI.
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===Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana===
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Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana.,Chida H, Yokoyama T, Kawai F, Nakazawa A, Akazaki H, Takayama Y, Hirano T, Suruga K, Satoh T, Yamada S, Kawachi R, Unzai S, Nishio T, Park SY, Oku T FEBS Lett. 2006 Jun 26;580(15):3763-8. Epub 2006 Jun 9. PMID:16777100<ref>PMID:16777100</ref>
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{{ABSTRACT_PUBMED_16777100}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2dge" style="background-color:#fffaf0;"></div>
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[[2dge]] is a 4 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DGE OCA].
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==See Also==
==See Also==
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*[[Cytochrome c|Cytochrome c]]
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*[[Cytochrome f 3D structures|Cytochrome f 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:016777100</ref><references group="xtra"/>
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__TOC__
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[[Category: Arabidopsis thaliana]]
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</StructureSection>
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[[Category: Akazaki, H.]]
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[[Category: Chida, H.]]
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[[Category: Hirano, T.]]
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[[Category: Kawachi, R.]]
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[[Category: Kawai, F.]]
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[[Category: Nakazawa, A.]]
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[[Category: Nishio, T.]]
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[[Category: Oku, T.]]
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[[Category: Park, S Y.]]
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[[Category: Satoh, T.]]
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[[Category: Suruga, K.]]
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[[Category: Takayama, Y.]]
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[[Category: Unzai, S.]]
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[[Category: Yamada, S.]]
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[[Category: Yokoyama, T.]]
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[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
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[[Category: Cytochrome c6a]]
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[[Category: Large Structures]]
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[[Category: Electron transfer]]
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[[Category: Akazaki H]]
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[[Category: Electron transport]]
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[[Category: Chida H]]
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[[Category: Heme exposure]]
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[[Category: Hirano T]]
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[[Category: Kawachi R]]
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[[Category: Kawai F]]
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[[Category: Nakazawa A]]
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[[Category: Nishio T]]
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[[Category: Oku T]]
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[[Category: Park S-Y]]
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[[Category: Satoh T]]
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[[Category: Suruga K]]
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[[Category: Takayama Y]]
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[[Category: Unzai S]]
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[[Category: Yamada S]]
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[[Category: Yokoyama T]]

Current revision

Crystal structure of oxidized cytochrome C6A from Arabidopsis thaliana

PDB ID 2dge

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