This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dhx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3dhx" [edit=sysop:move=sysop])
Current revision (09:41, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3dhx.png|left|200px]]
 
-
{{STRUCTURE_3dhx| PDB=3dhx | SCENE= }}
+
==Crystal structure of isolated C2 domain of the methionine uptake transporter==
-
 
+
<StructureSection load='3dhx' size='340' side='right'caption='[[3dhx]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
===Crystal structure of isolated C2 domain of the methionine uptake transporter===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3dhx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DHX FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_18621668}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dhx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dhx OCA], [https://pdbe.org/3dhx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dhx RCSB], [https://www.ebi.ac.uk/pdbsum/3dhx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dhx ProSAT]</span></td></tr>
-
[[3dhx]] is a 2 chain structure of [[ABC transporter]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DHX OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/METN_ECOLI METN_ECOLI] Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (Probable). It has also been shown to be involved in formyl-L-methionine transport.<ref>PMID:12169620</ref> <ref>PMID:12819857</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dhx_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dhx ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[ABC transporter|ABC transporter]]
+
*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:018621668</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Escherichia coli]]
+
</StructureSection>
-
[[Category: Johnson, E.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Kaiser, J T.]]
+
[[Category: Large Structures]]
-
[[Category: Lee, A T.]]
+
[[Category: Johnson E]]
-
[[Category: Rees, D C.]]
+
[[Category: Kaiser JT]]
-
[[Category: Amino-acid transport]]
+
[[Category: Lee AT]]
-
[[Category: Atp-binding]]
+
[[Category: Rees DC]]
-
[[Category: Hydrolase]]
+
-
[[Category: Inner membrane]]
+
-
[[Category: Membrane]]
+
-
[[Category: Methionine uptake]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Regulation]]
+
-
[[Category: Transport]]
+

Current revision

Crystal structure of isolated C2 domain of the methionine uptake transporter

PDB ID 3dhx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dhx"
Personal tools