This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2cvf
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2cvf.png|left|200px]] | ||
| - | + | ==Crystal structure of the RadB recombinase== | |
| - | + | <StructureSection load='2cvf' size='340' side='right'caption='[[2cvf]], [[Resolution|resolution]] 2.60Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2cvf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis Thermococcus kodakarensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CVF FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cvf OCA], [https://pdbe.org/2cvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cvf RCSB], [https://www.ebi.ac.uk/pdbsum/2cvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cvf ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[2cvf]] | + | == Function == |
| + | [https://www.uniprot.org/uniprot/RADB_THEKO RADB_THEKO] Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange (By similarity). | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cv/2cvf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cvf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | + | *[[Resolvase 3D structures|Resolvase 3D structures]] | |
| - | *[[Resolvase|Resolvase]] | + | __TOC__ |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | < | + | |
[[Category: Thermococcus kodakarensis]] | [[Category: Thermococcus kodakarensis]] | ||
| - | [[Category: Akiba | + | [[Category: Akiba T]] |
| - | [[Category: Harata | + | [[Category: Harata K]] |
| - | [[Category: Imanaka | + | [[Category: Imanaka T]] |
| - | [[Category: Ishii | + | [[Category: Ishii N]] |
| - | [[Category: Morikawa | + | [[Category: Morikawa M]] |
| - | [[Category: Rashid | + | [[Category: Rashid N]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of the RadB recombinase
| |||||||||||
