1d27

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[[Image:1d27.gif|left|200px]]<br /><applet load="1d27" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1d27, resolution 2.000&Aring;" />
 
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'''HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA'''<br />
 
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==Overview==
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==HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA==
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The self-complementary dodecanucleotide d[CGC(m6G)AATTTGCG]2 (where m6G is O6-methylguanine), which contains two m6G.T base pairs, has been analyzed by x-ray diffraction methods and the structure has been refined to a residual error of R = 0.185 at 2.0-A resolution. The m6G.T mispair closely resembles a Watson-Crick base pair and there are very few structural differences between the m6G.T duplex and the native analogue. The similarity between the m6G.T base pair and a normal G.C base pair explains the failure of mismatch repair enzymes to recognize and remove this mutagenic lesion. A series of ultraviolet melting studies over a wide pH range on a related dodecamer indicate that the m6G.C mispair can exist in two conformations; one is a wobble pair and the other is a protonated Watson-Crick pair. The former, which predominates at physiological pH, will be removed by normal proofreading and repair enzymes, whereas the latter is likely to escape detection. Hence, the occasional occurrence of the protonated m6G.C base pair may explain why the presence of m6G in genomic DNA does not always give rise to a mutation.
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<StructureSection load='1d27' size='340' side='right'caption='[[1d27]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1d27]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D27 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D27 FirstGlance]. <br>
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1D27 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D27 OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6OG:6-O-METHYL+GUANOSINE-5-MONOPHOSPHATE'>6OG</scene></td></tr>
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==Reference==
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d27 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d27 OCA], [https://pdbe.org/1d27 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d27 RCSB], [https://www.ebi.ac.uk/pdbsum/1d27 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d27 ProSAT]</span></td></tr>
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High-resolution structure of a mutagenic lesion in DNA., Leonard GA, Thomson J, Watson WP, Brown T, Proc Natl Acad Sci U S A. 1990 Dec;87(24):9573-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=2263612 2263612]
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</table>
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[[Category: Protein complex]]
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__TOC__
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[[Category: Brown, T.]]
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</StructureSection>
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[[Category: Leonard, G A.]]
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[[Category: Large Structures]]
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[[Category: Thomson, J.]]
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[[Category: Brown T]]
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[[Category: Watson, W P.]]
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[[Category: Leonard GA]]
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[[Category: b-dna]]
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[[Category: Thomson J]]
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[[Category: double helix]]
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[[Category: Watson WP]]
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[[Category: mismatched]]
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[[Category: modified]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:12:12 2008''
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Current revision

HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA

PDB ID 1d27

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