This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dby

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:49, 20 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dby.png|left|200px]]
 
-
{{STRUCTURE_1dby| PDB=1dby | SCENE= }}
+
==NMR STRUCTURES OF CHLOROPLAST THIOREDOXIN M CH2 FROM THE GREEN ALGA CHLAMYDOMONAS REINHARDTII==
-
 
+
<StructureSection load='1dby' size='340' side='right'caption='[[1dby]]' scene=''>
-
===NMR STRUCTURES OF CHLOROPLAST THIOREDOXIN M CH2 FROM THE GREEN ALGA CHLAMYDOMONAS REINHARDTII===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1dby]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DBY FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11025545}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dby OCA], [https://pdbe.org/1dby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dby RCSB], [https://www.ebi.ac.uk/pdbsum/1dby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dby ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1dby]] is a 1 chain structure of [[Thioredoxin]] with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DBY OCA].
+
== Function ==
 +
[https://www.uniprot.org/uniprot/TRXM_CHLRE TRXM_CHLRE] Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The M form is known to activate NADP-malate dehydrogenase (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/1dby_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dby ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Thioredoxin|Thioredoxin]]
+
*[[Thioredoxin 3D structures|Thioredoxin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:011025545</ref><references group="xtra"/>
+
[[Category: Chlamydomonas reinhardtii]]
[[Category: Chlamydomonas reinhardtii]]
-
[[Category: Blackledge, M J.]]
+
[[Category: Large Structures]]
-
[[Category: Guilhaudis, L.]]
+
[[Category: Blackledge MJ]]
-
[[Category: Krimm, I.]]
+
[[Category: Guilhaudis L]]
-
[[Category: Lancelin, J M.]]
+
[[Category: Krimm I]]
-
[[Category: Marion, D.]]
+
[[Category: Lancelin J-M]]
-
[[Category: Chloroplastic thioredoxin]]
+
[[Category: Marion D]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thioredoxin ch2]]
+
-
[[Category: Thioredoxin m]]
+

Current revision

NMR STRUCTURES OF CHLOROPLAST THIOREDOXIN M CH2 FROM THE GREEN ALGA CHLAMYDOMONAS REINHARDTII

PDB ID 1dby

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools