This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3d3n
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3d3n.png|left|200px]] | ||
| - | + | ==Crystal structure of lipase/esterase (lp_2923) from Lactobacillus plantarum. Northeast Structural Genomics Consortium target LpR108== | |
| - | + | <StructureSection load='3d3n' size='340' side='right'caption='[[3d3n]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3d3n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lacpl Lacpl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3N FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr> | |
| - | == | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[3d3n]] is a 2 chain structure | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lp_2923, Aes ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=220668 LACPL])</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3n OCA], [https://pdbe.org/3d3n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3n RCSB], [https://www.ebi.ac.uk/pdbsum/3d3n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3n ProSAT], [https://www.topsan.org/Proteins/NESGC/3d3n TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3n_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3n ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Lipase|Lipase]] | + | *[[Lipase 3D Structures|Lipase 3D Structures]] |
| - | [[Category: | + | __TOC__ |
| - | [[Category: Acton, T B | + | </StructureSection> |
| - | [[Category: Ciccosanti, C | + | [[Category: Lacpl]] |
| - | [[Category: Everett, J K | + | [[Category: Large Structures]] |
| - | [[Category: Foote, E L | + | [[Category: Acton, T B]] |
| - | [[Category: Forouhar, F | + | [[Category: Ciccosanti, C]] |
| - | [[Category: Hunt, J F | + | [[Category: Everett, J K]] |
| - | [[Category: Janjua, H | + | [[Category: Foote, E L]] |
| - | [[Category: Maglaqui, M | + | [[Category: Forouhar, F]] |
| - | [[Category: Mao, L | + | [[Category: Hunt, J F]] |
| - | [[Category: Montelione, G T | + | [[Category: Janjua, H]] |
| - | [[Category: | + | [[Category: Maglaqui, M]] |
| - | [[Category: Seetharaman, J | + | [[Category: Mao, L]] |
| - | [[Category: Su, M | + | [[Category: Montelione, G T]] |
| - | [[Category: Tong, L | + | [[Category: Structural genomic]] |
| - | [[Category: Xiao, R | + | [[Category: Seetharaman, J]] |
| - | [[Category: Zhao, L | + | [[Category: Su, M]] |
| + | [[Category: Tong, L]] | ||
| + | [[Category: Xiao, R]] | ||
| + | [[Category: Zhao, L]] | ||
[[Category: Alpha-beta protein]] | [[Category: Alpha-beta protein]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
| - | [[Category: | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of lipase/esterase (lp_2923) from Lactobacillus plantarum. Northeast Structural Genomics Consortium target LpR108
| |||||||||||
Categories: Lacpl | Large Structures | Acton, T B | Ciccosanti, C | Everett, J K | Foote, E L | Forouhar, F | Hunt, J F | Janjua, H | Maglaqui, M | Mao, L | Montelione, G T | Structural genomic | Seetharaman, J | Su, M | Tong, L | Xiao, R | Zhao, L | Alpha-beta protein | Hydrolase | Nesg | PSI, Protein structure initiative
