3t1f

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:48, 27 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3t1f.png|left|200px]]
 
-
{{STRUCTURE_3t1f| PDB=3t1f | SCENE= }}
+
==Crystal structure of the mouse CD1d-Glc-DAG-s2 complex==
 +
<StructureSection load='3t1f' size='340' side='right'caption='[[3t1f]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3t1f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T1F FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3TF:(2S)-1-(ALPHA-D-GLUCOPYRANOSYLOXY)-3-(HEXADECANOYLOXY)PROPAN-2-YL+(11Z)-OCTADEC-11-ENOATE'>3TF</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t1f OCA], [https://pdbe.org/3t1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t1f RCSB], [https://www.ebi.ac.uk/pdbsum/3t1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t1f ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CD1D1_MOUSE CD1D1_MOUSE] Antigen-presenting protein that binds self and non-self glycolipids and presents them to T-cell receptors on natural killer T-cells.<ref>PMID:11754812</ref> <ref>PMID:16314439</ref> <ref>PMID:16007091</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Natural killer T cells (NKT cells) recognize glycolipid antigens presented by CD1d. These cells express an evolutionarily conserved, invariant T cell antigen receptor (TCR), but the forces that drive TCR conservation have remained uncertain. Here we show that NKT cells recognized diacylglycerol-containing glycolipids from Streptococcus pneumoniae, the leading cause of community-acquired pneumonia, and group B Streptococcus, which causes neonatal sepsis and meningitis. Furthermore, CD1d-dependent responses by NKT cells were required for activation and host protection. The glycolipid response was dependent on vaccenic acid, which is present in low concentrations in mammalian cells. Our results show how microbial lipids position the sugar for recognition by the invariant TCR and, most notably, extend the range of microbes recognized by this conserved TCR to several clinically important bacteria.
-
===Crystal structure of the mouse CD1d-Glc-DAG-s2 complex===
+
Invariant natural killer T cells recognize glycolipids from pathogenic Gram-positive bacteria.,Kinjo Y, Illarionov P, Vela JL, Pei B, Girardi E, Li X, Li Y, Imamura M, Kaneko Y, Okawara A, Miyazaki Y, Gomez-Velasco A, Rogers P, Dahesh S, Uchiyama S, Khurana A, Kawahara K, Yesilkaya H, Andrew PW, Wong CH, Kawakami K, Nizet V, Besra GS, Tsuji M, Zajonc DM, Kronenberg M Nat Immunol. 2011 Sep 4. doi: 10.1038/ni.2096. PMID:21892173<ref>PMID:21892173</ref>
-
{{ABSTRACT_PUBMED_21892173}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3t1f" style="background-color:#fffaf0;"></div>
-
[[3t1f]] is a 2 chain structure of [[Beta-2 microglobulin]] with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T1F OCA].
+
==See Also==
==See Also==
-
*[[Beta-2 microglobulin|Beta-2 microglobulin]]
+
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
-
 
+
*[[CD1|CD1]]
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:021892173</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Girardi, E.]]
+
[[Category: Girardi E]]
-
[[Category: Zajonc, D M.]]
+
[[Category: Zajonc DM]]
-
[[Category: Antigen presentation]]
+
-
[[Category: Glycolipid]]
+
-
[[Category: Immune system]]
+
-
[[Category: Nkt cell]]
+

Current revision

Crystal structure of the mouse CD1d-Glc-DAG-s2 complex

PDB ID 3t1f

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools