3bkc
From Proteopedia
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- | [[Image:3bkc.png|left|200px]] | ||
- | + | ==Crystal structure of anti-amyloid beta FAB WO2 (P21, FormB)== | |
+ | <StructureSection load='3bkc' size='340' side='right'caption='[[3bkc]], [[Resolution|resolution]] 1.90Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[3bkc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BKC FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bkc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bkc OCA], [https://pdbe.org/3bkc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bkc RCSB], [https://www.ebi.ac.uk/pdbsum/3bkc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bkc ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A2NHM3_MOUSE A2NHM3_MOUSE] | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bk/3bkc_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bkc ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Alzheimer's disease (AD) is the most common form of dementia. Amyloid-beta (A beta) peptide, generated by proteolytic cleavage of the amyloid precursor protein, is central to AD pathogenesis. Most pharmaceutical activity in AD research has focused on A beta, its generation and clearance from the brain. In particular, there is much interest in immunotherapy approaches with a number of anti-A beta antibodies in clinical trials. We have developed a monoclonal antibody, called WO2, which recognises the A beta peptide. To this end, we have determined the three-dimensional structure, to near atomic resolution, of both the antibody and the complex with its antigen, the A beta peptide. The structures reveal the molecular basis for WO2 recognition and binding of A beta. The A beta peptide adopts an extended, coil-like conformation across its major immunodominant B-cell epitope between residues 2 and 8. We have also studied the antibody-bound A beta peptide in the presence of metals known to affect its aggregation state and show that WO2 inhibits these interactions. Thus, antibodies that target the N-terminal region of A beta, such as WO2, hold promise for therapeutic development. | ||
- | + | Amyloid-beta-anti-amyloid-beta complex structure reveals an extended conformation in the immunodominant B-cell epitope.,Miles LA, Wun KS, Crespi GA, Fodero-Tavoletti MT, Galatis D, Bagley CJ, Beyreuther K, Masters CL, Cappai R, McKinstry WJ, Barnham KJ, Parker MW J Mol Biol. 2008 Mar 14;377(1):181-92. Epub 2008 Jan 30. PMID:18237744<ref>PMID:18237744</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | <div class="pdbe-citations 3bkc" style="background-color:#fffaf0;"></div> | |
- | + | ||
==See Also== | ==See Also== | ||
- | *[[Antibody|Antibody]] | + | *[[Antibody 3D structures|Antibody 3D structures]] |
- | + | *[[Sandbox 20009|Sandbox 20009]] | |
- | == | + | *[[3D structures of non-human antibody|3D structures of non-human antibody]] |
- | < | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
[[Category: Mus musculus]] | [[Category: Mus musculus]] | ||
- | [[Category: Bageley | + | [[Category: Bageley CJ]] |
- | [[Category: Barnham | + | [[Category: Barnham KJ]] |
- | [[Category: Beyreuther | + | [[Category: Beyreuther K]] |
- | [[Category: Cappai | + | [[Category: Cappai R]] |
- | [[Category: Crespi | + | [[Category: Crespi GA]] |
- | [[Category: Fodero-Tavoletti | + | [[Category: Fodero-Tavoletti M]] |
- | [[Category: Galatis | + | [[Category: Galatis D]] |
- | [[Category: Masters | + | [[Category: Masters CL]] |
- | [[Category: McKinstry | + | [[Category: McKinstry WJ]] |
- | [[Category: Miles | + | [[Category: Miles LA]] |
- | [[Category: Parker | + | [[Category: Parker MW]] |
- | [[Category: Wun | + | [[Category: Wun KS]] |
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Current revision
Crystal structure of anti-amyloid beta FAB WO2 (P21, FormB)
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Categories: Large Structures | Mus musculus | Bageley CJ | Barnham KJ | Beyreuther K | Cappai R | Crespi GA | Fodero-Tavoletti M | Galatis D | Masters CL | McKinstry WJ | Miles LA | Parker MW | Wun KS