2ix2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:28, 13 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ix2.png|left|200px]]
 
-
{{STRUCTURE_2ix2| PDB=2ix2 | SCENE= }}
+
==Crystal structure of the heterotrimeric PCNA from Sulfolobus solfataricus==
 +
<StructureSection load='2ix2' size='340' side='right'caption='[[2ix2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2ix2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IX2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IX2 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ix2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ix2 OCA], [https://pdbe.org/2ix2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ix2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ix2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ix2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PCNA1_SACS2 PCNA1_SACS2] One of the sliding clamp subunits that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. Heterotrimer stimulates the Holliday junction resolvase Hjc. DNA polymerase I, DNA ligase and the flap endonuclease may be constitutively associated with the PCNA heterotrimer forming a scanning complex able to couple DNA synthesis and Okazaki fragment maturation.<ref>PMID:12535540</ref> <ref>PMID:17011573</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ix/2ix2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ix2 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
PCNA is a ring-shaped protein that encircles DNA, providing a platform for the association of a wide variety of DNA-processing enzymes that utilize the PCNA sliding clamp to maintain proximity to their DNA substrates. PCNA is a homotrimer in eukaryotes, but a heterotrimer in crenarchaea such as Sulfolobus solfataricus. The three proteins are SsoPCNA1 (249 residues), SsoPCNA2 (245 residues) and SsoPCNA3 (259 residues). The heterotrimeric protein crystallizes in space group P2(1), with unit-cell parameters a = 44.8, b = 78.8, c = 125.6 A, beta = 100.5 degrees. The crystal structure of this heterotrimeric PCNA molecule has been solved using molecular replacement. The resulting structure to 2.3 A sheds light on the differential stabilities of the interactions observed between the three subunits and the specificity of individual subunits for partner proteins.
-
===CRYSTAL STRUCTURE OF THE HETEROTRIMERIC PCNA FROM SULFOLOBUS SOLFATARICUS===
+
Structure of the heterotrimeric PCNA from Sulfolobus solfataricus.,Williams GJ, Johnson K, Rudolf J, McMahon SA, Carter L, Oke M, Liu H, Taylor GL, White MF, Naismith JH Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Oct 1;62(Pt, 10):944-8. Epub 2006 Sep 19. PMID:17012780<ref>PMID:17012780</ref>
-
{{ABSTRACT_PUBMED_17012780}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2ix2" style="background-color:#fffaf0;"></div>
-
[[2ix2]] is a 3 chain structure of [[Proliferating Cell Nuclear Antigen]] with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IX2 OCA].
+
==See Also==
==See Also==
-
*[[Proliferating Cell Nuclear Antigen|Proliferating Cell Nuclear Antigen]]
+
*[[Proliferating cell nuclear antigen 3D structures|Proliferating cell nuclear antigen 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:017012780</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Sulfolobus solfataricus]]
+
</StructureSection>
-
[[Category: Carter, L.]]
+
[[Category: Large Structures]]
-
[[Category: Johnson, K.]]
+
[[Category: Saccharolobus solfataricus]]
-
[[Category: Liu, H.]]
+
[[Category: Carter L]]
-
[[Category: Mcmahon, S A.]]
+
[[Category: Johnson K]]
-
[[Category: Naismith, J H.]]
+
[[Category: Liu H]]
-
[[Category: Oke, M.]]
+
[[Category: McMahon SA]]
-
[[Category: Taylor, G L.]]
+
[[Category: Naismith JH]]
-
[[Category: White, M F.]]
+
[[Category: Oke M]]
-
[[Category: Williams, G J.]]
+
[[Category: Taylor GL]]
-
[[Category: Dna replication]]
+
[[Category: White MF]]
-
[[Category: Dna-binding]]
+
[[Category: Williams GJ]]
-
[[Category: Pcna]]
+
-
[[Category: Replication]]
+
-
[[Category: Sulfolobus sulfataricus]]
+

Current revision

Crystal structure of the heterotrimeric PCNA from Sulfolobus solfataricus

PDB ID 2ix2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools