This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1amp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:26, 13 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1amp.png|left|200px]]
 
-
{{STRUCTURE_1amp| PDB=1amp | SCENE= }}
+
==CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE: A PROTOTYPICAL MEMBER OF THE CO-CATALYTIC ZINC ENZYME FAMILY==
-
 
+
<StructureSection load='1amp' size='340' side='right'caption='[[1amp]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE: A PROTOTYPICAL MEMBER OF THE CO-CATALYTIC ZINC ENZYME FAMILY===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1amp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_proteolyticus Vibrio proteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AMP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AMP FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_8087555}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1amp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1amp OCA], [https://pdbe.org/1amp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1amp RCSB], [https://www.ebi.ac.uk/pdbsum/1amp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1amp ProSAT]</span></td></tr>
-
[[1amp]] is a 1 chain structure of [[Aminopeptidase]] with sequence from [http://en.wikipedia.org/wiki/Vibrio_proteolyticus Vibrio proteolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AMP OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMPX_VIBPR AMPX_VIBPR]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/1amp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1amp ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Aminopeptidase|Aminopeptidase]]
+
*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:008087555</ref><ref group="xtra">PMID:010595564</ref><ref group="xtra">PMID:011170211</ref><ref group="xtra">PMID:015028118</ref><ref group="xtra">PMID:015122907</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Bacterial leucyl aminopeptidase]]
+
[[Category: Vibrio proteolyticus]]
[[Category: Vibrio proteolyticus]]
-
[[Category: Chevrier, B.]]
+
[[Category: Chevrier B]]
-
[[Category: Moras, D.]]
+
[[Category: D'Orchymont H]]
-
[[Category: Orchymont, H D.]]
+
[[Category: Moras D]]
-
[[Category: Rondeau, J M.]]
+
[[Category: Rondeau JM]]
-
[[Category: Schalk, C.]]
+
[[Category: Schalk C]]
-
[[Category: Tarnus, C.]]
+
[[Category: Tarnus C]]

Current revision

CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE: A PROTOTYPICAL MEMBER OF THE CO-CATALYTIC ZINC ENZYME FAMILY

PDB ID 1amp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools