This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1gyh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:25, 27 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1gyh.png|left|200px]]
 
-
{{STRUCTURE_1gyh| PDB=1gyh | SCENE= }}
+
==Structure of D158A Cellvibrio cellulosa alpha-L-arabinanase mutant==
-
 
+
<StructureSection load='1gyh' size='340' side='right'caption='[[1gyh]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
-
===STRUCTURE OF D158A CELLVIBRIO CELLULOSA ALPHA-L-ARABINANASE MUTANT===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1gyh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYH FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12198486}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.89&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gyh OCA], [https://pdbe.org/1gyh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gyh RCSB], [https://www.ebi.ac.uk/pdbsum/1gyh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gyh ProSAT]</span></td></tr>
-
[[1gyh]] is a 6 chain structure of [[Arabinanase]] with sequence from [http://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYH OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ARBA_CELJU ARBA_CELJU] Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of the terminal alpha-(1->5)-arabinofuranosyl bonds of linear arabinan and carboxymethylarabinan to produce almost exclusively arabinotriose.<ref>PMID:12198486</ref> <ref>PMID:15708971</ref> <ref>PMID:9163351</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gyh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gyh ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Arabinanase|Arabinanase]]
+
*[[Arabinanase 3D structures|Arabinanase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:012198486</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Arabinan endo-1,5-alpha-L-arabinosidase]]
+
</StructureSection>
[[Category: Cellvibrio japonicus]]
[[Category: Cellvibrio japonicus]]
-
[[Category: Charnock, S J.]]
+
[[Category: Large Structures]]
-
[[Category: Davies, G J.]]
+
[[Category: Charnock SJ]]
-
[[Category: Dodson, E J.]]
+
[[Category: Davies GJ]]
-
[[Category: Gilbert, H J.]]
+
[[Category: Dodson EJ]]
-
[[Category: Mckie, V A.]]
+
[[Category: Gilbert HJ]]
-
[[Category: Nurizzo, D.]]
+
[[Category: McKie VA]]
-
[[Category: Roberts, S M.]]
+
[[Category: Nurizzo D]]
-
[[Category: Taylor, E J.]]
+
[[Category: Roberts SM]]
-
[[Category: Turkenburg, J P.]]
+
[[Category: Taylor EJ]]
-
[[Category: Arabinanase]]
+
[[Category: Turkenburg JP]]
-
[[Category: Catalysis]]
+
-
[[Category: Cellvibrio]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Propeller]]
+
-
[[Category: Pseudomona]]
+

Current revision

Structure of D158A Cellvibrio cellulosa alpha-L-arabinanase mutant

PDB ID 1gyh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools