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2dby
From Proteopedia
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| - | [[Image:2dby.png|left|200px]] | ||
| - | + | ==Crystal structure of the GTP-binding protein YchF in complexed with GDP== | |
| - | + | <StructureSection load='2dby' size='340' side='right'caption='[[2dby]], [[Resolution|resolution]] 1.76Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2dby]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DBY FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76Å</td></tr> | |
| - | == | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[2dby]] is a 1 chain structure | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dby OCA], [https://pdbe.org/2dby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dby RCSB], [https://www.ebi.ac.uk/pdbsum/2dby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dby ProSAT], [https://www.topsan.org/Proteins/RSGI/2dby TOPSAN]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5SJ29_THET8 Q5SJ29_THET8] ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.[HAMAP-Rule:MF_00944] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/2dby_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dby ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[GTP-binding protein|GTP-binding protein]] | + | *[[GTP-binding protein 3D structures|GTP-binding protein 3D structures]] |
| - | [[Category: Thermus thermophilus]] | + | __TOC__ |
| - | [[Category: Kukimoto-Niino | + | </StructureSection> |
| - | [[Category: Kuramitsu | + | [[Category: Large Structures]] |
| - | [[Category: Murayama | + | [[Category: Thermus thermophilus HB8]] |
| - | + | [[Category: Kukimoto-Niino M]] | |
| - | [[Category: Shirouzu | + | [[Category: Kuramitsu S]] |
| - | [[Category: Yokoyama | + | [[Category: Murayama K]] |
| - | + | [[Category: Shirouzu M]] | |
| - | + | [[Category: Yokoyama S]] | |
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Current revision
Crystal structure of the GTP-binding protein YchF in complexed with GDP
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