This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dt1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:53, 20 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dt1.png|left|200px]]
 
-
{{STRUCTURE_1dt1| PDB=1dt1 | SCENE= }}
+
==THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI==
-
 
+
<StructureSection load='1dt1' size='340' side='right'caption='[[1dt1]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1dt1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DT1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DT1 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11152119}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dt1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dt1 OCA], [https://pdbe.org/1dt1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dt1 RCSB], [https://www.ebi.ac.uk/pdbsum/1dt1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dt1 ProSAT]</span></td></tr>
-
[[1dt1]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DT1 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY552_THET8 CY552_THET8] This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dt/1dt1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dt1 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:011152119</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Ai, J.]]
+
[[Category: Ai J]]
-
[[Category: Chen, Y.]]
+
[[Category: Chen Y]]
-
[[Category: Fee, J A.]]
+
[[Category: Fee JA]]
-
[[Category: Gomez-Moran, E.]]
+
[[Category: Gomez-Moran E]]
-
[[Category: Hill, M J.]]
+
[[Category: Hill MJ]]
-
[[Category: Loehr, T.]]
+
[[Category: Loehr T]]
-
[[Category: McRee, D E.]]
+
[[Category: McRee DE]]
-
[[Category: Sridhar, V.]]
+
[[Category: Sridhar V]]
-
[[Category: Stura, E.]]
+
[[Category: Stura E]]
-
[[Category: Thony-Meyer, L.]]
+
[[Category: Thony-Meyer L]]
-
[[Category: Williams, P A.]]
+
[[Category: Williams PA]]
-
[[Category: Cytochrome c552]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thermus thermophilus]]
+

Current revision

THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI

PDB ID 1dt1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dt1"
Personal tools