This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3no3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3no3" [edit=sysop:move=sysop])
Current revision (11:46, 1 February 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3no3.png|left|200px]]
 
-
{{STRUCTURE_3no3| PDB=3no3 | SCENE= }}
+
==Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from Parabacteroides distasonis ATCC 8503 at 1.89 A resolution==
-
 
+
<StructureSection load='3no3' size='340' side='right'caption='[[3no3]], [[Resolution|resolution]] 1.89&Aring;' scene=''>
-
===Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from Parabacteroides distasonis ATCC 8503 at 1.89 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3no3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parabacteroides_distasonis_ATCC_8503 Parabacteroides distasonis ATCC 8503]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NO3 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3no3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3no3 OCA], [https://pdbe.org/3no3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3no3 RCSB], [https://www.ebi.ac.uk/pdbsum/3no3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3no3 ProSAT]</span></td></tr>
-
[[3no3]] is a 1 chain structure of [[Phosphodiesterase]] with sequence from [http://en.wikipedia.org/wiki/Parabacteroides_distasonis Parabacteroides distasonis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NO3 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A6L916_PARD8 A6L916_PARD8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/no/3no3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3no3 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phosphodiesterase|Phosphodiesterase]]
+
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
-
[[Category: Parabacteroides distasonis]]
+
__TOC__
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Hydrolase]]
+
[[Category: Large Structures]]
-
[[Category: Jcsg]]
+
[[Category: Parabacteroides distasonis ATCC 8503]]
-
[[Category: Joint center for structural genomic]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of a glycerophosphodiester phosphodiesterase (BDI_0402) from Parabacteroides distasonis ATCC 8503 at 1.89 A resolution

PDB ID 3no3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools