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1gye
From Proteopedia
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| - | [[Image:1gye.png|left|200px]] | ||
| - | + | ==Structure of Cellvibrio cellulosa alpha-L-arabinanase complexed with Arabinohexaose== | |
| - | + | <StructureSection load='1gye' size='340' side='right'caption='[[1gye]], [[Resolution|resolution]] 2.50Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[1gye]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GYE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GYE FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AHR:ALPHA-L-ARABINOFURANOSE'>AHR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gye FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gye OCA], [https://pdbe.org/1gye PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gye RCSB], [https://www.ebi.ac.uk/pdbsum/1gye PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gye ProSAT]</span></td></tr> |
| - | [[1gye]] is a 1 chain structure | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ARBA_CELJU ARBA_CELJU] Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the cleavage of the terminal alpha-(1->5)-arabinofuranosyl bonds of linear arabinan and carboxymethylarabinan to produce almost exclusively arabinotriose.<ref>PMID:12198486</ref> <ref>PMID:15708971</ref> <ref>PMID:9163351</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gy/1gye_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gye ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Arabinanase|Arabinanase]] | *[[Arabinanase|Arabinanase]] | ||
| - | + | *[[Arabinanase 3D structures|Arabinanase 3D structures]] | |
| - | == | + | == References == |
| - | < | + | <references/> |
| - | + | __TOC__ | |
| + | </StructureSection> | ||
[[Category: Cellvibrio japonicus]] | [[Category: Cellvibrio japonicus]] | ||
| - | [[Category: Charnock | + | [[Category: Large Structures]] |
| - | [[Category: Davies | + | [[Category: Charnock SJ]] |
| - | [[Category: Dodson | + | [[Category: Davies GJ]] |
| - | [[Category: Gilbert | + | [[Category: Dodson EJ]] |
| - | [[Category: | + | [[Category: Gilbert HJ]] |
| - | [[Category: Nurizzo | + | [[Category: McKie VA]] |
| - | [[Category: Roberts | + | [[Category: Nurizzo D]] |
| - | [[Category: Taylor | + | [[Category: Roberts SM]] |
| - | [[Category: Turkenburg | + | [[Category: Taylor EJ]] |
| - | + | [[Category: Turkenburg JP]] | |
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Current revision
Structure of Cellvibrio cellulosa alpha-L-arabinanase complexed with Arabinohexaose
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