1mgy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:01, 30 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mgy.png|left|200px]]
 
-
{{STRUCTURE_1mgy| PDB=1mgy | SCENE= }}
+
==Structure of the D85S mutant of bacteriorhodopsin with bromide bound==
 +
<StructureSection load='1mgy' size='340' side='right'caption='[[1mgy]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1mgy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MGY FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LI1:1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL'>LI1</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mgy OCA], [https://pdbe.org/1mgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mgy RCSB], [https://www.ebi.ac.uk/pdbsum/1mgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mgy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mg/1mgy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mgy ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We report the crystal structure of a bromide-bound form of the D85S mutant of bacteriorhodopsin, bR(D85S), a protein that uses light energy rather than ATP to pump halide ions across the cell membrane. Comparison of the structure of the halide-bound and halide-free states reveals that both displacements of individual side-chain positions and concerted helical movements occur on the extracellular side of the protein. Analysis of these structural changes reveals how this ion pump first facilitates ion uptake deep within the cell membrane and then prevents the backward escape of ions later in the pumping cycle. Together with the information provided by structures of intermediate states in the bacteriorhodopsin photocycle, this study also suggests the overall design principles that are necessary for ion pumping.
-
===Structure of the D85S mutant of bacteriorhodopsin with bromide bound===
+
Crystal structure of the bromide-bound D85S mutant of bacteriorhodopsin: principles of ion pumping.,Facciotti MT, Cheung VS, Nguyen D, Rouhani S, Glaeser RM Biophys J. 2003 Jul;85(1):451-8. PMID:12829500<ref>PMID:12829500</ref>
-
{{ABSTRACT_PUBMED_12829500}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1mgy" style="background-color:#fffaf0;"></div>
-
[[1mgy]] is a 1 chain structure of [[Bacteriorhodopsin]] with sequence from [http://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MGY OCA].
+
==See Also==
==See Also==
-
*[[Bacteriorhodopsin|Bacteriorhodopsin]]
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:012829500</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
-
[[Category: Cheung, V S.]]
+
[[Category: Large Structures]]
-
[[Category: Facciotti, M T.]]
+
[[Category: Cheung VS]]
-
[[Category: Glaeser, R M.]]
+
[[Category: Facciotti MT]]
-
[[Category: Nguyen, D.]]
+
[[Category: Glaeser RM]]
-
[[Category: Rouhani, S.]]
+
[[Category: Nguyen D]]
-
[[Category: Anion]]
+
[[Category: Rouhani S]]
-
[[Category: Bacteriorhodopsin]]
+
-
[[Category: Bromide]]
+
-
[[Category: Halide]]
+
-
[[Category: Proton transport]]
+
-
[[Category: Pump]]
+

Current revision

Structure of the D85S mutant of bacteriorhodopsin with bromide bound

PDB ID 1mgy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mgy"
Personal tools