3da1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:47, 6 November 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3da1.png|left|200px]]
 
-
{{STRUCTURE_3da1| PDB=3da1 | SCENE= }}
+
==X-Ray structure of the glycerol-3-phosphate dehydrogenase from Bacillus halodurans complexed with FAD. Northeast Structural Genomics Consortium target BhR167.==
-
 
+
<StructureSection load='3da1' size='340' side='right'caption='[[3da1]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
===X-Ray structure of the glycerol-3-phosphate dehydrogenase from Bacillus halodurans complexed with FAD. Northeast Structural Genomics Consortium target BhR167.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3da1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DA1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DA1 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3da1]] is a 1 chain structure of [[Glycerol-3-Phosphate Dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DA1 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3da1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3da1 OCA], [https://pdbe.org/3da1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3da1 RCSB], [https://www.ebi.ac.uk/pdbsum/3da1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3da1 ProSAT], [https://www.topsan.org/Proteins/NESGC/3da1 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9KDW6_HALH5 Q9KDW6_HALH5]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/3da1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3da1 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Glycerol-3-Phosphate Dehydrogenase|Glycerol-3-Phosphate Dehydrogenase]]
+
*[[Glycerol-3-phosphate dehydrogenase 3D structures|Glycerol-3-phosphate dehydrogenase 3D structures]]
-
[[Category: Bacillus halodurans]]
+
__TOC__
-
[[Category: Abashidze, M.]]
+
</StructureSection>
-
[[Category: Acton, T B.]]
+
[[Category: Alkalihalobacillus halodurans]]
-
[[Category: Baran, M C.]]
+
[[Category: Large Structures]]
-
[[Category: Hunt, J F.]]
+
[[Category: Abashidze M]]
-
[[Category: Janjua, H.]]
+
[[Category: Acton TB]]
-
[[Category: Kuzin, A P.]]
+
[[Category: Baran MC]]
-
[[Category: Montelione, G T.]]
+
[[Category: Hunt JF]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Janjua H]]
-
[[Category: Nair, R.]]
+
[[Category: Kuzin AP]]
-
[[Category: Owens, L.]]
+
[[Category: Montelione GT]]
-
[[Category: Rost, B.]]
+
[[Category: Nair R]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Owens L]]
-
[[Category: Tong, L.]]
+
[[Category: Rost B]]
-
[[Category: Wang, D.]]
+
[[Category: Seetharaman J]]
-
[[Category: Xiao, R.]]
+
[[Category: Tong L]]
-
[[Category: Nesg bhr167 q9kdw6 x-ray]]
+
[[Category: Wang D]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Xiao R]]
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+

Current revision

X-Ray structure of the glycerol-3-phosphate dehydrogenase from Bacillus halodurans complexed with FAD. Northeast Structural Genomics Consortium target BhR167.

PDB ID 3da1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools