This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2r1p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:32, 3 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2r1p.png|left|200px]]
 
-
{{STRUCTURE_2r1p| PDB=2r1p | SCENE= }}
+
==OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A==
-
 
+
<StructureSection load='2r1p' size='340' side='right'caption='[[2r1p]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2r1p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R1P FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_18082180}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=DPJ:O,O-DIETHYL+HYDROGEN+THIOPHOSPHATE'>DPJ</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r1p OCA], [https://pdbe.org/2r1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r1p RCSB], [https://www.ebi.ac.uk/pdbsum/2r1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r1p ProSAT]</span></td></tr>
-
[[2r1p]] is a 1 chain structure of [[Phosphotriesterase]] with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R1P OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q93LD7_RHIRD Q93LD7_RHIRD]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r1/2r1p_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r1p ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Phosphotriesterase|Phosphotriesterase]]
+
*[[Phosphotriesterase 3D structures|Phosphotriesterase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:018082180</ref><references group="xtra"/>
+
[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium tumefaciens]]
-
[[Category: Aryldialkylphosphatase]]
+
[[Category: Large Structures]]
-
[[Category: Carr, P D.]]
+
[[Category: Carr PD]]
-
[[Category: Foo, J L.]]
+
[[Category: Foo JL]]
-
[[Category: Jackson, C J.]]
+
[[Category: Jackson CJ]]
-
[[Category: Kim, H K.]]
+
[[Category: Kim HK]]
-
[[Category: Liu, J W.]]
+
[[Category: Liu JW]]
-
[[Category: Ollis, D L.]]
+
[[Category: Ollis DL]]
-
[[Category: Salem, G.]]
+
[[Category: Salem G]]
-
[[Category: Hydrolase]]
+
-
[[Category: Metalloenzyme]]
+
-
[[Category: Opda]]
+
-
[[Category: Phosphotriesterase]]
+

Current revision

OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A

PDB ID 2r1p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2r1p"
Personal tools