2zxp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2zxp" [edit=sysop:move=sysop])
Current revision (14:01, 1 November 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2zxp.png|left|200px]]
 
-
{{STRUCTURE_2zxp| PDB=2zxp | SCENE= }}
+
==Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8==
 +
<StructureSection load='2zxp' size='340' side='right'caption='[[2zxp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2zxp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZXP FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zxp OCA], [https://pdbe.org/2zxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zxp RCSB], [https://www.ebi.ac.uk/pdbsum/2zxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zxp ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RECJ_THET8 RECJ_THET8] Single-stranded-DNA-specific exonuclease acting in a 5' to 3' direction; has no detectable activity on ssRNA.<ref>PMID:21087930</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zxp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zxp ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
RecJ is a single-stranded DNA (ssDNA)-specific 5'-3' exonuclease that plays an important role in DNA repair and recombination. To elucidate how RecJ achieves its high specificity for ssDNA, we determined the entire structures of RecJ both in a ligand-free form and in a complex with Mn(2+) or Mg(2+) by x-ray crystallography. The entire RecJ consists of four domains that form a molecule with an O-like structure. One of two newly identified domains had structural similarities to an oligonucleotide/oligosaccharide-binding (OB) fold. The OB fold domain alone could bind to DNA, indicating that this domain is a novel member of the OB fold superfamily. The truncated RecJ containing only the core domain exhibited much lower affinity for the ssDNA substrate compared with intact RecJ. These results support the hypothesis that these structural features allow specific binding of RecJ to ssDNA. In addition, the structure of the RecJ-Mn(2+) complex suggests that the hydrolysis reaction catalyzed by RecJ proceeds through a two-metal ion mechanism.
-
===Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8===
+
Structure of RecJ exonuclease defines its specificity for single-stranded DNA.,Wakamatsu T, Kitamura Y, Kotera Y, Nakagawa N, Kuramitsu S, Masui R J Biol Chem. 2010 Mar 26;285(13):9762-9. Epub 2010 Feb 2. PMID:20129927<ref>PMID:20129927</ref>
-
{{ABSTRACT_PUBMED_20129927}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2zxp" style="background-color:#fffaf0;"></div>
-
[[2zxp]] is a 1 chain structure of [[Exonuclease]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXP OCA].
+
==See Also==
==See Also==
-
*[[Exonuclease|Exonuclease]]
+
*[[Exonuclease 3D structures|Exonuclease 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020129927</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Thermus thermophilus]]
+
</StructureSection>
-
[[Category: Kitamura, Y.]]
+
[[Category: Large Structures]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Masui, R.]]
+
[[Category: Kitamura Y]]
-
[[Category: Nakagawa, N.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Wakamatsu, T.]]
+
[[Category: Masui R]]
-
[[Category: Dna repair]]
+
[[Category: Nakagawa N]]
-
[[Category: Exonuclease]]
+
[[Category: Wakamatsu T]]
-
[[Category: Hydrolase]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Single-stranded dna]]
+

Current revision

Crystal structure of RecJ in complex with Mn2+ from Thermus thermophilus HB8

PDB ID 2zxp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zxp"
Personal tools