This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ndp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3ndp" [edit=sysop:move=sysop])
Current revision (08:32, 20 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ndp.png|left|200px]]
 
-
{{STRUCTURE_3ndp| PDB=3ndp | SCENE= }}
+
==Crystal structure of human AK4(L171P)==
-
 
+
<StructureSection load='3ndp' size='340' side='right'caption='[[3ndp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
===Crystal structure of human AK4(L171P)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ndp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NDP FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_19073142}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ndp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndp OCA], [https://pdbe.org/3ndp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ndp RCSB], [https://www.ebi.ac.uk/pdbsum/3ndp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ndp ProSAT]</span></td></tr>
-
[[3ndp]] is a 2 chain structure of [[Adenylate kinase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDP OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/KAD4_HUMAN KAD4_HUMAN] Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. May also be active with GTP (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nd/3ndp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ndp ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Adenylate kinase|Adenylate kinase]]
+
*[[Adenylate kinase 3D structures|Adenylate kinase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:019073142</ref><references group="xtra"/>
+
-
[[Category: Adenylate kinase]]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Gong, W.]]
+
[[Category: Large Structures]]
-
[[Category: Liu, R.]]
+
[[Category: Gong W]]
-
[[Category: Wang, Y.]]
+
[[Category: Liu R]]
-
[[Category: Wei, Z.]]
+
[[Category: Wang Y]]
-
[[Category: Alpha-helice]]
+
[[Category: Wei Z]]
-
[[Category: Parallel beta-sheet]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of human AK4(L171P)

PDB ID 3ndp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools