This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3a13
From Proteopedia
(Difference between revisions)
m (Protected "3a13" [edit=sysop:move=sysop]) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3a13.png|left|200px]] | ||
| - | + | ==Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca== | |
| - | + | <StructureSection load='3a13' size='340' side='right'caption='[[3a13]], [[Resolution|resolution]] 2.34Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3a13]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A13 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.34Å</td></tr> | |
| - | == | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [[3a13]] is a 10 chain structure | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a13 OCA], [https://pdbe.org/3a13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a13 RCSB], [https://www.ebi.ac.uk/pdbsum/3a13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a13 ProSAT]</span></td></tr> |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RBL_THEKO RBL_THEKO] Catalyzes the addition of molecular CO(2) and H(2)O to ribulose 1,5-bisphosphate (RuBP), generating two molecules of 3-phosphoglycerate (3-PGA). Functions in an archaeal AMP degradation pathway, together with AMP phosphorylase and R15P isomerase.[HAMAP-Rule:MF_01133]<ref>PMID:17303759</ref> <ref>PMID:20926376</ref> <ref>PMID:9988755</ref> | ||
==See Also== | ==See Also== | ||
| - | *[[RuBisCO|RuBisCO]] | + | *[[RuBisCO 3D structures|RuBisCO 3D structures]] |
| - | [[Category: | + | == References == |
| - | [[Category: Thermococcus kodakarensis]] | + | <references/> |
| - | [[Category: Atomi | + | __TOC__ |
| - | [[Category: Doi | + | </StructureSection> |
| - | [[Category: Fujihashi | + | [[Category: Large Structures]] |
| - | [[Category: Imanaka | + | [[Category: Thermococcus kodakarensis KOD1]] |
| - | [[Category: Miki | + | [[Category: Atomi H]] |
| - | [[Category: Nishitani | + | [[Category: Doi T]] |
| - | [[Category: Yoshida | + | [[Category: Fujihashi M]] |
| - | + | [[Category: Imanaka T]] | |
| - | + | [[Category: Miki K]] | |
| - | + | [[Category: Nishitani Y]] | |
| - | + | [[Category: Yoshida S]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP and activated with Ca
| |||||||||||
