This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5nll
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:5nll.png|left|200px]] | ||
| - | + | ==CLOSTRIDIUM BEIJERINCKII FLAVODOXIN: OXIDIZED== | |
| - | + | <StructureSection load='5nll' size='340' side='right'caption='[[5nll]], [[Resolution|resolution]] 1.75Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[5nll]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_beijerinckii Clostridium beijerinckii]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fxn 3fxn] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fxn 1fxn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NLL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NLL FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nll FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nll OCA], [https://pdbe.org/5nll PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nll RCSB], [https://www.ebi.ac.uk/pdbsum/5nll PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nll ProSAT]</span></td></tr> |
| - | [[5nll]] is a 1 chain structure | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/FLAV_CLOBE FLAV_CLOBE] Low-potential electron donor to a number of redox enzymes. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nl/5nll_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5nll ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Flavodoxin|Flavodoxin]] | + | *[[Flavodoxin 3D structures|Flavodoxin 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | ||
[[Category: Clostridium beijerinckii]] | [[Category: Clostridium beijerinckii]] | ||
| - | [[Category: Dixon | + | [[Category: Large Structures]] |
| - | [[Category: Eren | + | [[Category: Dixon MM]] |
| - | [[Category: Feng | + | [[Category: Eren M]] |
| - | [[Category: Ludwig | + | [[Category: Feng Y]] |
| - | [[Category: Metzger | + | [[Category: Ludwig ML]] |
| - | [[Category: Pattridge | + | [[Category: Metzger AL]] |
| - | [[Category: Swenson | + | [[Category: Pattridge KA]] |
| - | + | [[Category: Swenson R]] | |
| - | + | ||
| - | + | ||
Current revision
CLOSTRIDIUM BEIJERINCKII FLAVODOXIN: OXIDIZED
| |||||||||||

