1fnw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (23:58, 20 November 2024) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fnw.gif|left|200px]]<br /><applet load="1fnw" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1fnw, resolution 3.9&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A'''<br />
 
-
==Overview==
+
==CRYSTAL STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A==
 +
<StructureSection load='1fnw' size='340' side='right'caption='[[1fnw]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1fnw]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_phage_T12 Streptococcus phage T12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FNW FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fnw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fnw OCA], [https://pdbe.org/1fnw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fnw RCSB], [https://www.ebi.ac.uk/pdbsum/1fnw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fnw ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPEA_STRPY SPEA_STRPY] Causative agent of the symptoms associated with scarlet fever, have been associated with streptococcal toxic shock-like disease and may play a role in the early events of rheumatic fever.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fn/1fnw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fnw ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
The streptococcal pyrogenic toxins A, B, and C (SPEA, SPEB, and SPEC) are responsible for the fever, rash, and other toxicities associated with scarlet fever and streptococcal toxic shock syndrome. This role, together with the ubiquity of diseases caused by Streptococcus pyogenes, have prompted structural analyses of SPEA by several groups. Papageorgiou et al. (1999) have recently reported the structure of SPEA crystallized in the absence of zinc. Zinc has been shown to be important in the ability of some staphylococcal and streptococcal toxins to stimulate proliferation of CD4+ T-cells. Since cadmium is more electron dense than zinc and typically binds interchangeably, we grew crystals in the presence of 10 mM CdCl2. Crystals have been obtained in three space groups, and the structure in the P2(1)2(1)2(1) crystal form has been refined to 1.9 A resolution. The structural analysis revealed an identical tetramer as well as a novel tetrahedral cluster of cadmium in all three crystal forms on a disulfide loop encompassing residues 87-98. No cadmium was bound at the site homologous to the zinc site in staphylococcal enterotoxins C (SECs) despite the high structural homology between SPEA and SECs. Subsequent soaking of crystals grown in the presence of cadmium in 10 mM ZnCl2 showed that zinc binds in this site (indicating it can discriminate between zinc and cadmium ions) using the three ligands (Asp77, His106, and His110) homologous to the SECs plus a fourth ligand (Glu33).
The streptococcal pyrogenic toxins A, B, and C (SPEA, SPEB, and SPEC) are responsible for the fever, rash, and other toxicities associated with scarlet fever and streptococcal toxic shock syndrome. This role, together with the ubiquity of diseases caused by Streptococcus pyogenes, have prompted structural analyses of SPEA by several groups. Papageorgiou et al. (1999) have recently reported the structure of SPEA crystallized in the absence of zinc. Zinc has been shown to be important in the ability of some staphylococcal and streptococcal toxins to stimulate proliferation of CD4+ T-cells. Since cadmium is more electron dense than zinc and typically binds interchangeably, we grew crystals in the presence of 10 mM CdCl2. Crystals have been obtained in three space groups, and the structure in the P2(1)2(1)2(1) crystal form has been refined to 1.9 A resolution. The structural analysis revealed an identical tetramer as well as a novel tetrahedral cluster of cadmium in all three crystal forms on a disulfide loop encompassing residues 87-98. No cadmium was bound at the site homologous to the zinc site in staphylococcal enterotoxins C (SECs) despite the high structural homology between SPEA and SECs. Subsequent soaking of crystals grown in the presence of cadmium in 10 mM ZnCl2 showed that zinc binds in this site (indicating it can discriminate between zinc and cadmium ions) using the three ligands (Asp77, His106, and His110) homologous to the SECs plus a fourth ligand (Glu33).
-
==About this Structure==
+
Structure of streptococcal pyrogenic exotoxin A reveals a novel metal cluster.,Earhart CA, Vath GM, Roggiani M, Schlievert PM, Ohlendorf DH Protein Sci. 2000 Sep;9(9):1847-51. PMID:11045630<ref>PMID:11045630</ref>
-
1FNW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes] with <scene name='pdbligand=CD:'>CD</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FNW OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structure of streptococcal pyrogenic exotoxin A reveals a novel metal cluster., Earhart CA, Vath GM, Roggiani M, Schlievert PM, Ohlendorf DH, Protein Sci. 2000 Sep;9(9):1847-51. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11045630 11045630]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 1fnw" style="background-color:#fffaf0;"></div>
-
[[Category: Streptococcus pyogenes]]
+
-
[[Category: Earhart, C A.]]
+
-
[[Category: Ohlendorf, D H.]]
+
-
[[Category: Roggiani, M.]]
+
-
[[Category: Schlivert, P M.]]
+
-
[[Category: Vath, G M.]]
+
-
[[Category: CD]]
+
-
[[Category: exotoxin a]]
+
-
[[Category: superantigen]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:40:42 2008''
+
==See Also==
 +
*[[Exotoxin 3D structures|Exotoxin 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Streptococcus phage T12]]
 +
[[Category: Earhart CA]]
 +
[[Category: Ohlendorf DH]]
 +
[[Category: Roggiani M]]
 +
[[Category: Schlivert PM]]
 +
[[Category: Vath GM]]

Current revision

CRYSTAL STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A

PDB ID 1fnw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools