This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1g03

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:18, 27 March 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1g03.jpg|left|200px]]<br /><applet load="1g03" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1g03" />
 
-
'''NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134'''<br />
 
-
==Overview==
+
==NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134==
-
The N-terminal domain of the retroviral capsid (CA) protein is one of the least conserved regions encoded in the genome. Surprisingly, the three-dimensional structures of the CA from different genera exhibit alpha-helical structural features that are highly conserved. The N-terminal residues of the human immunodeficiency virus type 1 (HIV-1) and Rous sarcoma virus (RSV) capsid proteins form a beta-hairpin. To determine if this feature is conserved in the retroviral family, we cloned, expressed, purified, and solved the structure of a N-terminal 134 amino acid fragment (CA(134)) from the human T-cell leukemia virus type 1 (HTLV-I) using high resolution nuclear magnetic resonance (NMR) spectroscopy. The CA(134) fragment contains an N-terminal beta-hairpin and a central coiled-coil-like structure composed of six alpha-helices. The N-terminal Pro1 residue contacts Asp54 in the helical cluster through a salt bridge. Thus, the beta-hairpin is conserved and the helical cluster is structurally similar to other retroviral CA domains. However, although the same Asp residue defines the orientation of the hairpin in both the HTLV-1 and HIV-1 CA proteins, the HTLV-I hairpin is oriented away, rather than towards, the helical core. Significant differences were also detected in the spatial orientation and helical content of the long centrally located loop connecting the helices in the core. It has been proposed that the salt bridge allows the formation of a CA-CA interface that is important for the assembly of the conical cores that are characteristic of HIV-1. As HTLV-I forms spherical cores, the salt-bridge feature is apparently not conserved for this function although its role in determining the orientation of the beta-hairpin may be critical, along with the central loop. Comparison of three-dimensional structures is expected to elucidate the relationships between the retroviral capsid protein structure and its function.
+
<StructureSection load='1g03' size='340' side='right'caption='[[1g03]]' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1g03]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_T-cell_leukemia_virus_type_I Human T-cell leukemia virus type I]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G03 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G03 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g03 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g03 OCA], [https://pdbe.org/1g03 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g03 RCSB], [https://www.ebi.ac.uk/pdbsum/1g03 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g03 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GAG_HTL1M GAG_HTL1M] Matrix protein p19 targets Gag, Gag-Pro and Gag-Pro-Pol polyproteins to the plasma membrane via a multipartite membrane binding signal, that includes its myristoylated N-terminus. Also mediates nuclear localization of the preintegration complex (By similarity). Capsid protein p24 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p15 is involved in the packaging and encapsidation of two copies of the genome (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g0/1g03_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g03 ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1G03 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Human_t-lymphotropic_virus_1 Human t-lymphotropic virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G03 OCA].
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein., Cornilescu CC, Bouamr F, Yao X, Carter C, Tjandra N, J Mol Biol. 2001 Mar 2;306(4):783-97. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11243788 11243788]
+
[[Category: Human T-cell leukemia virus type I]]
-
[[Category: Human t-lymphotropic virus 1]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Bouamr F]]
-
[[Category: Bouamr, F.]]
+
[[Category: Carter C]]
-
[[Category: Carter, C.]]
+
[[Category: Cornilescu CC]]
-
[[Category: Cornilescu, C.]]
+
[[Category: Tjandra N]]
-
[[Category: Tjandra, N.]]
+
[[Category: Yao X]]
-
[[Category: Yao, X.]]
+
-
[[Category: beta hairpin loop]]
+
-
[[Category: helix core]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:44:31 2008''
+

Current revision

NMR STRUCTURE OF N-TERMINAL DOMAIN OF HTLV-I CA1-134

PDB ID 1g03

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1g03"
Personal tools