1g6i

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[[Image:1g6i.gif|left|200px]]<br /><applet load="1g6i" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="1g6i, resolution 1.59&Aring;" />
 
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'''CRYSTAL STRUCTURE OF THE YEAST ALPHA-1,2-MANNOSIDASE WITH BOUND 1-DEOXYMANNOJIRIMYCIN AT 1.59 A RESOLUTION'''<br />
 
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==About this Structure==
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==Crystal structure of the yeast alpha-1,2-mannosidase with bound 1-deoxymannojirimycin at 1.59 A resolution==
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1G6I is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with <scene name='pdbligand=NAG:'>NAG</scene>, <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=DMJ:'>DMJ</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Mannosyl-oligosaccharide_1,2-alpha-mannosidase Mannosyl-oligosaccharide 1,2-alpha-mannosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.113 3.2.1.113] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G6I OCA].
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<StructureSection load='1g6i' size='340' side='right'caption='[[1g6i]], [[Resolution|resolution]] 1.59&Aring;' scene=''>
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[[Category: Mannosyl-oligosaccharide 1,2-alpha-mannosidase]]
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== Structural highlights ==
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[[Category: Saccharomyces cerevisiae]]
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<table><tr><td colspan='2'>[[1g6i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G6I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G6I FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.59&#8491;</td></tr>
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[[Category: Herscovics, A.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DMJ:1-DEOXYMANNOJIRIMYCIN'>DMJ</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
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[[Category: Howell, P A]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g6i OCA], [https://pdbe.org/1g6i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g6i RCSB], [https://www.ebi.ac.uk/pdbsum/1g6i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g6i ProSAT]</span></td></tr>
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[[Category: Lipari, F.]]
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</table>
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[[Category: Romera, P A.]]
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== Function ==
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[[Category: Sleno, B.]]
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[https://www.uniprot.org/uniprot/MNS1_YEAST MNS1_YEAST] Involved in glycoprotein quality control as it is important for the targeting of misfolded glycoproteins for degradation. It primarily trims a single alpha-1,2-linked mannose residue from Man(9)GlcNAc(2) to produce Man(8)GlcNAc(2), but at high enzyme concentrations it further trims the carbohydrates to Man(5)GlcNAc(2).<ref>PMID:12090241</ref>
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[[Category: Vallee, F.]]
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== Evolutionary Conservation ==
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[[Category: Yip, P.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: CA]]
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Check<jmol>
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[[Category: DMJ]]
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<jmolCheckbox>
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[[Category: NAG]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g6/1g6i_consurf.spt"</scriptWhenChecked>
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[[Category: alpha-alpha7 barrel]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g6i ConSurf].
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<div style="clear:both"></div>
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 12:46:41 2008''
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==See Also==
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*[[Mannosidase 3D structures|Mannosidase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Saccharomyces cerevisiae]]
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[[Category: Herscovics A]]
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[[Category: Howell PA]]
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[[Category: Lipari F]]
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[[Category: Romera PA]]
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[[Category: Sleno B]]
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[[Category: Vallee F]]
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[[Category: Yip P]]

Current revision

Crystal structure of the yeast alpha-1,2-mannosidase with bound 1-deoxymannojirimycin at 1.59 A resolution

PDB ID 1g6i

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