1op9
From Proteopedia
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- | [[Image:1op9.png|left|200px]] | ||
- | + | ==Complex of human lysozyme with camelid VHH HL6 antibody fragment== | |
+ | <StructureSection load='1op9' size='340' side='right'caption='[[1op9]], [[Resolution|resolution]] 1.86Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[1op9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Camelus_dromedarius Camelus dromedarius] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OP9 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86Å</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1op9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1op9 OCA], [https://pdbe.org/1op9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1op9 RCSB], [https://www.ebi.ac.uk/pdbsum/1op9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1op9 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/LYSC_HUMAN LYSC_HUMAN] Defects in LYZ are a cause of amyloidosis type 8 (AMYL8) [MIM:[https://omim.org/entry/105200 105200]; also known as systemic non-neuropathic amyloidosis or Ostertag-type amyloidosis. AMYL8 is a hereditary generalized amyloidosis due to deposition of apolipoprotein A1, fibrinogen and lysozyme amyloids. Viscera are particularly affected. There is no involvement of the nervous system. Clinical features include renal amyloidosis resulting in nephrotic syndrome, arterial hypertension, hepatosplenomegaly, cholestasis, petechial skin rash.<ref>PMID:8464497</ref> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/LYSC_HUMAN LYSC_HUMAN] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/1op9_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1op9 ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Amyloid diseases are characterized by an aberrant assembly of a specific protein or protein fragment into fibrils and plaques that are deposited in various organs and tissues, often with serious pathological consequences. Non-neuropathic systemic amyloidosis is associated with single point mutations in the gene coding for human lysozyme. Here we report that a single-domain fragment of a camelid antibody raised against wild-type human lysozyme inhibits the in vitro aggregation of its amyloidogenic variant, D67H. Our structural studies reveal that the epitope includes neither the site of mutation nor most residues in the region of the protein structure that is destabilized by the mutation. Instead, the binding of the antibody fragment achieves its effect by restoring the structural cooperativity characteristic of the wild-type protein. This appears to occur at least in part through the transmission of long-range conformational effects to the interface between the two structural domains of the protein. Thus, reducing the ability of an amyloidogenic protein to form partly unfolded species can be an effective method of preventing its aggregation, suggesting approaches to the rational design of therapeutic agents directed against protein deposition diseases. | ||
- | + | A camelid antibody fragment inhibits the formation of amyloid fibrils by human lysozyme.,Dumoulin M, Last AM, Desmyter A, Decanniere K, Canet D, Larsson G, Spencer A, Archer DB, Sasse J, Muyldermans S, Wyns L, Redfield C, Matagne A, Robinson CV, Dobson CM Nature. 2003 Aug 14;424(6950):783-8. PMID:12917687<ref>PMID:12917687</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | <div class="pdbe-citations 1op9" style="background-color:#fffaf0;"></div> | |
- | + | ||
==See Also== | ==See Also== | ||
- | *[[ | + | *[[Antibody 3D structures|Antibody 3D structures]] |
- | + | *[[Lysozyme 3D structures|Lysozyme 3D structures]] | |
- | == | + | *[[3D structures of non-human antibody|3D structures of non-human antibody]] |
- | < | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Camelus dromedarius]] | [[Category: Camelus dromedarius]] | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Archer | + | [[Category: Archer DB]] |
- | [[Category: Canet | + | [[Category: Canet D]] |
- | [[Category: Decanniere | + | [[Category: Decanniere K]] |
- | [[Category: Desmyter | + | [[Category: Desmyter A]] |
- | [[Category: Dobson | + | [[Category: Dobson CM]] |
- | [[Category: Dumoulin | + | [[Category: Dumoulin M]] |
- | [[Category: Larsson | + | [[Category: Larsson G]] |
- | [[Category: Last | + | [[Category: Last AM]] |
- | [[Category: Matagne | + | [[Category: Matagne A]] |
- | [[Category: Muyldermans | + | [[Category: Muyldermans S]] |
- | [[Category: Redfield | + | [[Category: Redfield C]] |
- | [[Category: Robinson | + | [[Category: Robinson CV]] |
- | [[Category: Sasse | + | [[Category: Sasse J]] |
- | [[Category: Spencer | + | [[Category: Spencer A]] |
- | [[Category: Wyns | + | [[Category: Wyns L]] |
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Current revision
Complex of human lysozyme with camelid VHH HL6 antibody fragment
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Categories: Camelus dromedarius | Homo sapiens | Large Structures | Archer DB | Canet D | Decanniere K | Desmyter A | Dobson CM | Dumoulin M | Larsson G | Last AM | Matagne A | Muyldermans S | Redfield C | Robinson CV | Sasse J | Spencer A | Wyns L