This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1n63

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1n63" [edit=sysop:move=sysop])
Current revision (13:27, 13 March 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1n63.png|left|200px]]
 
-
{{STRUCTURE_1n63| PDB=1n63 | SCENE= }}
+
==Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Carbon monoxide reduced state==
-
 
+
<StructureSection load='1n63' size='340' side='right'caption='[[1n63]], [[Resolution|resolution]] 1.21&Aring;' scene=''>
-
===Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Carbon monoxide reduced state===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1n63]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Afipia_carboxidovorans_OM5 Afipia carboxidovorans OM5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N63 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N63 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_12475995}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.21&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CUN:CU(I)-S-MO(IV)(=O)OH+CLUSTER'>CUN</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n63 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n63 OCA], [https://pdbe.org/1n63 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n63 RCSB], [https://www.ebi.ac.uk/pdbsum/1n63 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n63 ProSAT]</span></td></tr>
-
[[1n63]] is a 6 chain structure of [[Carbon monoxide dehydrogenase]] with sequence from [http://en.wikipedia.org/wiki/Oligotropha_carboxidovorans Oligotropha carboxidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N63 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCMS_AFIC5 DCMS_AFIC5] Catalyzes the oxidation of carbon monoxide to carbon dioxide.<ref>PMID:12475995</ref> <ref>PMID:21275368</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n6/1n63_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1n63 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Carbon monoxide dehydrogenase|Carbon monoxide dehydrogenase]]
+
*[[Carbon monoxide dehydrogenase 3D structures|Carbon monoxide dehydrogenase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:012475995</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Oligotropha carboxidovorans]]
+
</StructureSection>
-
[[Category: Dobbek, H.]]
+
[[Category: Afipia carboxidovorans OM5]]
-
[[Category: Gremer, L.]]
+
[[Category: Large Structures]]
-
[[Category: Huber, R.]]
+
[[Category: Dobbek H]]
-
[[Category: Kiefersauer, R.]]
+
[[Category: Gremer L]]
-
[[Category: Meyer, O.]]
+
[[Category: Huber R]]
-
[[Category: Codh]]
+
[[Category: Kiefersauer R]]
-
[[Category: Molybdenum]]
+
[[Category: Meyer O]]
-
[[Category: Molybdopterin]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal Structure of the Cu,Mo-CO Dehydrogenase (CODH); Carbon monoxide reduced state

PDB ID 1n63

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools