This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1j5w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:39, 25 January 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1j5w.png|left|200px]]
 
-
{{STRUCTURE_1j5w| PDB=1j5w | SCENE= }}
+
==Crystal structure of Glycyl-tRNA synthetase alpha chain (TM0216) from Thermotoga maritima at 1.95 A resolution==
-
 
+
<StructureSection load='1j5w' size='340' side='right'caption='[[1j5w]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
===Crystal structure of Glycyl-tRNA synthetase alpha chain (TM0216) from Thermotoga maritima at 1.95 A resolution===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1j5w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J5W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J5W FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j5w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j5w OCA], [https://pdbe.org/1j5w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j5w RCSB], [https://www.ebi.ac.uk/pdbsum/1j5w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j5w ProSAT], [https://www.topsan.org/Proteins/JCSG/1j5w TOPSAN]</span></td></tr>
-
[[1j5w]] is a 2 chain structure of [[Aminoacyl tRNA Synthetase]] with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J5W OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SYGA_THEMA SYGA_THEMA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j5/1j5w_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j5w ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Aminoacyl tRNA Synthetase|Aminoacyl tRNA Synthetase]]
+
*[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]]
-
[[Category: Glycine--tRNA ligase]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Thermotoga maritima]]
[[Category: Thermotoga maritima]]
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
 
-
[[Category: Glycyl-trna synthetase alpha chain]]
 
-
[[Category: Jcsg]]
 
-
[[Category: Joint center for structural genomic]]
 
-
[[Category: Ligase]]
 
-
[[Category: Protein structure initiative]]
 
-
[[Category: Psi]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Tm0216]]
 

Current revision

Crystal structure of Glycyl-tRNA synthetase alpha chain (TM0216) from Thermotoga maritima at 1.95 A resolution

PDB ID 1j5w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools