This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1szn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:36, 1 May 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1szn.png|left|200px]]
 
-
{{STRUCTURE_1szn| PDB=1szn | SCENE= }}
+
==THE STRUCTURE OF ALPHA-GALACTOSIDASE==
-
 
+
<StructureSection load='1szn' size='340' side='right'caption='[[1szn]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
-
===THE STRUCTURE OF ALPHA-GALACTOSIDASE===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1szn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SZN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SZN FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15136043}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1szn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1szn OCA], [https://pdbe.org/1szn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1szn RCSB], [https://www.ebi.ac.uk/pdbsum/1szn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1szn ProSAT]</span></td></tr>
-
[[1szn]] is a 1 chain structure of [[Galactosidase]] with sequence from [http://en.wikipedia.org/wiki/Trichoderma_reesei Trichoderma reesei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SZN OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q92456_HYPJE Q92456_HYPJE] Hydrolyzes a variety of simple alpha-D-galactoside as well as more complex molecules such as oligosaccharides and polysaccharides.[ARBA:ARBA00003969]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sz/1szn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1szn ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Galactosidase|Galactosidase]]
+
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:015136043</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Alpha-galactosidase]]
+
[[Category: Trichoderma reesei]]
[[Category: Trichoderma reesei]]
-
[[Category: Eneyskaya, E V.]]
+
[[Category: Brando Neto JR]]
-
[[Category: Golubev, A M.]]
+
[[Category: Eneyskaya EV]]
-
[[Category: Kulminskaya, A A.]]
+
[[Category: Golubev AM]]
-
[[Category: Nagem, R A.P.]]
+
[[Category: Kulminskaya AA]]
-
[[Category: Neto, J R.Brando.]]
+
[[Category: Nagem RAP]]
-
[[Category: Neustroev, K N.]]
+
[[Category: Neustroev KN]]
-
[[Category: Polikarpov, I.]]
+
[[Category: Polikarpov I]]
-
[[Category: Shabalin, K A.]]
+
[[Category: Savel'ev AN]]
-
[[Category: Ev, A N.Savel.]]
+
[[Category: Shabalin KA]]
-
[[Category: Glycoprotein]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Two domain]]
+

Current revision

THE STRUCTURE OF ALPHA-GALACTOSIDASE

PDB ID 1szn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools