This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3iyf
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3iyf.png|left|200px]] | ||
| - | + | ==Atomic Model of the Lidless Mm-cpn in the Open State== | |
| - | + | <SX load='3iyf' size='340' side='right' viewer='molstar' caption='[[3iyf]], [[Resolution|resolution]] 8.00Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3iyf]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcus_maripaludis Methanococcus maripaludis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYF FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 8Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iyf OCA], [https://pdbe.org/3iyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iyf RCSB], [https://www.ebi.ac.uk/pdbsum/3iyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iyf ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[3iyf]] | + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q877G8_METMI Q877G8_METMI] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iy/3iyf_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iyf ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Chaperonin|Chaperonin]] | + | *[[Chaperonin 3D structures|Chaperonin 3D structures]] |
| - | *[[Heat Shock | + | *[[Heat Shock Protein structures|Heat Shock Protein structures]] |
| - | + | __TOC__ | |
| - | + | </SX> | |
| - | < | + | [[Category: Large Structures]] |
[[Category: Methanococcus maripaludis]] | [[Category: Methanococcus maripaludis]] | ||
| - | [[Category: Baker | + | [[Category: Baker ML]] |
| - | [[Category: Chiu | + | [[Category: Chiu W]] |
| - | [[Category: Dougherty | + | [[Category: Dougherty M]] |
| - | [[Category: Douglas | + | [[Category: Douglas NR]] |
| - | [[Category: Frydman | + | [[Category: Frydman J]] |
| - | [[Category: Fu | + | [[Category: Fu CJ]] |
| - | [[Category: Jakana | + | [[Category: Jakana J]] |
| - | [[Category: Levitt | + | [[Category: Levitt M]] |
| - | [[Category: Ludtke | + | [[Category: Ludtke SJ]] |
| - | [[Category: Reissmann | + | [[Category: Reissmann S]] |
| - | [[Category: Schroeder | + | [[Category: Schroeder G]] |
| - | [[Category: Zhang | + | [[Category: Zhang J]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Atomic Model of the Lidless Mm-cpn in the Open State
| |||||||||
Categories: Large Structures | Methanococcus maripaludis | Baker ML | Chiu W | Dougherty M | Douglas NR | Frydman J | Fu CJ | Jakana J | Levitt M | Ludtke SJ | Reissmann S | Schroeder G | Zhang J

