2gdm
From Proteopedia
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| - | [[Image:2gdm.png|left|200px]] | ||
| - | + | ==LEGHEMOGLOBIN (OXY)== | |
| - | + | <StructureSection load='2gdm' size='340' side='right'caption='[[2gdm]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2gdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lupinus_luteus Lupinus luteus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdm 1gdm]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GDM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gdm OCA], [https://pdbe.org/2gdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gdm RCSB], [https://www.ebi.ac.uk/pdbsum/2gdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gdm ProSAT]</span></td></tr> |
| - | [[2gdm]] is a 1 chain structure | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/LGB2_LUPLU LGB2_LUPLU] Provides oxygen to the bacteroids. This role is essential for symbiotic nitrogen fixation. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/2gdm_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gdm ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Hemoglobin|Hemoglobin]] | + | *[[Hemoglobin 3D structures|Hemoglobin 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
[[Category: Lupinus luteus]] | [[Category: Lupinus luteus]] | ||
| - | [[Category: Dodson | + | [[Category: Dodson GG]] |
| - | [[Category: Harutyunyan | + | [[Category: Harutyunyan EH]] |
| - | [[Category: Kuranova | + | [[Category: Kuranova IP]] |
| - | [[Category: Obmolova | + | [[Category: Obmolova GV]] |
| - | [[Category: Perutz | + | [[Category: Perutz MF]] |
| - | [[Category: Popov | + | [[Category: Popov AN]] |
| - | [[Category: Rusakov | + | [[Category: Rusakov AA]] |
| - | [[Category: Safonova | + | [[Category: Safonova TN]] |
| - | [[Category: Teplyakov | + | [[Category: Teplyakov AV]] |
| - | [[Category: Wilson | + | [[Category: Wilson JC]] |
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Current revision
LEGHEMOGLOBIN (OXY)
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