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3gdz
From Proteopedia
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| - | [[Image:3gdz.png|left|200px]] | ||
| - | + | ==Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae== | |
| - | + | <StructureSection load='3gdz' size='340' side='right'caption='[[3gdz]], [[Resolution|resolution]] 2.20Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3gdz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Klep7 Klep7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDZ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | |
| - | == | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[3gdz]] is a 4 chain structure | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argS, KPN78578_23530, KPN_02388 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272620 KLEP7])</td></tr> |
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arginine--tRNA_ligase Arginine--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.19 6.1.1.19] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdz OCA], [https://pdbe.org/3gdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdz RCSB], [https://www.ebi.ac.uk/pdbsum/3gdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdz ProSAT], [https://www.topsan.org/Proteins/MCSG/3gdz TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdz_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gdz ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Aminoacyl tRNA | + | *[[Aminoacyl tRNA synthetase 3D structures|Aminoacyl tRNA synthetase 3D structures]] |
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Arginine--tRNA ligase]] | [[Category: Arginine--tRNA ligase]] | ||
| - | [[Category: | + | [[Category: Klep7]] |
| - | [[Category: Bearden, J | + | [[Category: Large Structures]] |
| - | [[Category: Chang, C | + | [[Category: Bearden, J]] |
| - | [[Category: Joachimiak, A | + | [[Category: Chang, C]] |
| - | [[Category: | + | [[Category: Joachimiak, A]] |
| - | [[Category: Wu, R | + | [[Category: Structural genomic]] |
| + | [[Category: Wu, R]] | ||
[[Category: Aminoacyl-trna synthetase]] | [[Category: Aminoacyl-trna synthetase]] | ||
[[Category: Arginyl-trna synthetase]] | [[Category: Arginyl-trna synthetase]] | ||
| Line 24: | Line 39: | ||
[[Category: Ligase]] | [[Category: Ligase]] | ||
[[Category: Mcsg]] | [[Category: Mcsg]] | ||
| - | [[Category: Midwest center for structural genomic]] | ||
[[Category: Nucleotide-binding]] | [[Category: Nucleotide-binding]] | ||
[[Category: Protein biosynthesis]] | [[Category: Protein biosynthesis]] | ||
| - | [[Category: Protein structure initiative | + | [[Category: PSI, Protein structure initiative]] |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of arginyl-tRNA synthetase from Klebsiella pneumoniae subsp. pneumoniae
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Categories: Arginine--tRNA ligase | Klep7 | Large Structures | Bearden, J | Chang, C | Joachimiak, A | Structural genomic | Wu, R | Aminoacyl-trna synthetase | Arginyl-trna synthetase | Atp-binding | Klebsiella pneumoniae subsp. pneumoniae mgh 78578 | Ligase | Mcsg | Nucleotide-binding | Protein biosynthesis | PSI, Protein structure initiative
