3ucp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:45, 30 October 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ucp.jpg|left|200px]]
 
-
{{STRUCTURE_3ucp| PDB=3ucp | SCENE= }}
+
==Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6==
 +
<StructureSection load='3ucp' size='340' side='right'caption='[[3ucp]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3ucp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_sp._HRCR_06 Shewanella sp. HRCR_06]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UCP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UCP FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ucp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ucp OCA], [https://pdbe.org/3ucp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ucp RCSB], [https://www.ebi.ac.uk/pdbsum/3ucp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ucp ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/F8UWD6_9GAMM F8UWD6_9GAMM]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Members of the genus Shewanella translocate deca- or undeca-heme cytochromes to the external cell surface thus enabling respiration using extracellular minerals and polynuclear Fe(III) chelates. The high resolution structure of the first undeca-heme outer membrane cytochrome, UndA, reveals a crossed heme chain with four potential electron ingress/egress sites arranged within four domains. Sequence and structural alignment of UndA and the deca-heme MtrF reveals the extra heme of UndA is inserted between MtrF hemes 6 and 7. The remaining UndA hemes can be superposed over the heme chain of the decaheme MtrF, suggesting that a ten heme core is conserved between outer membrane cytochromes. The UndA structure has also been crystallographically resolved in complex with substrates, an Fe(III)-nitrilotriacetate dimer or an Fe(III)-citrate trimer. The structural resolution of these UndA-Fe(III)-chelate complexes provides a rationale for previous kinetic measurements on UndA and other outer membrane cytochromes.
-
===Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6===
+
The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates.,Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA Structure. 2012 Jul 3;20(7):1275-84. Epub 2012 Jun 7. PMID:22682743<ref>PMID:22682743</ref>
-
{{ABSTRACT_PUBMED_22682743}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3ucp" style="background-color:#fffaf0;"></div>
-
[[3ucp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_sp._hrcr_06 Shewanella sp. hrcr_06]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UCP OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:022682743</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Shewanella sp. hrcr_06]]
+
[[Category: Large Structures]]
-
[[Category: Clarke, T A.]]
+
[[Category: Shewanella sp. HRCR_06]]
-
[[Category: Edwards, M J.]]
+
[[Category: Clarke TA]]
-
[[Category: Beta-barrel]]
+
[[Category: Edwards MJ]]
-
[[Category: C-type cytochrome]]
+
-
[[Category: C-type heme]]
+
-
[[Category: Cell surface]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Transport protein]]
+

Current revision

Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6

PDB ID 3ucp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools