1yq5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1yq5" [edit=sysop:move=sysop])
Current revision (07:15, 9 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yq5.png|left|200px]]
 
-
{{STRUCTURE_1yq5| PDB=1yq5 | SCENE= }}
+
==PRD1 vertex protein P5==
 +
<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_PRD1 Enterobacteria phage PRD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [https://pdbe.org/1yq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Comparisons of bacteriophage PRD1 and adenovirus protein structures and virion architectures have been instrumental in unraveling an evolutionary relationship and have led to a proposal of a phylogeny-based virus classification. The structure of the PRD1 spike protein P5 provides further insight into the evolution of viral proteins. The crystallized P5 fragment comprises two structural domains: a globular knob and a fibrous shaft. The head folds into a ten-stranded jelly roll beta barrel, which is structurally related to the tumor necrosis factor (TNF) and the PRD1 coat protein domains. The shaft domain is a structural counterpart to the adenovirus spike shaft. The structural relationships between PRD1, TNF, and adenovirus proteins suggest that the vertex proteins may have originated from an ancestral TNF-like jelly roll coat protein via a combination of gene duplication and deletion.
-
===PRD1 vertex protein P5===
+
The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.,Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R Mol Cell. 2005 Apr 15;18(2):161-70. PMID:15837420<ref>PMID:15837420</ref>
-
{{ABSTRACT_PUBMED_15837420}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1yq5" style="background-color:#fffaf0;"></div>
-
[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:015837420</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Enterobacteria phage prd1]]
+
[[Category: Enterobacteria phage PRD1]]
-
[[Category: Bamford, D H.]]
+
[[Category: Large Structures]]
-
[[Category: Goldman, A.]]
+
[[Category: Bamford DH]]
-
[[Category: Huiskonen, J T.]]
+
[[Category: Goldman A]]
-
[[Category: Merckel, M C.]]
+
[[Category: Huiskonen JT]]
-
[[Category: Tuma, R.]]
+
[[Category: Merckel MC]]
-
[[Category: Beta-jelly-roll]]
+
[[Category: Tuma R]]
-
[[Category: Beta-spiral]]
+
-
[[Category: Viral protein]]
+

Current revision

PRD1 vertex protein P5

PDB ID 1yq5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yq5"
Personal tools